RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 TET1Q8NFU7 2136 aa23.43■■□□□ 1.34
CCDC40-206ENST00000572083 OTUD7AQ8TE49 926 aaPredicted RBP23.43■■□□□ 1.34
CCDC40-206ENST00000572083 HLA-CQ95604 372 aa23.43■■□□□ 1.34
CCDC40-206ENST00000572083 NOD1Q9Y239 953 aa23.43■■□□□ 1.34
CCDC40-206ENST00000572083 BTNL9Q6UXG8 535 aa23.42■■□□□ 1.34
CCDC40-206ENST00000572083 RNF207Q6ZRF8 634 aa23.42■■□□□ 1.34
CCDC40-206ENST00000572083 CLEC4DQ8WXI8 215 aa23.42■■□□□ 1.34
CCDC40-206ENST00000572083 LCHNA4D1U4 455 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 A6NJR5 290 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 NKRFO15226 690 aaKnown RBP eCLIP23.41■■□□□ 1.34
CCDC40-206ENST00000572083 HOXD11P31277 338 aaPredicted RBP23.41■■□□□ 1.34
CCDC40-206ENST00000572083 NOVP48745 357 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 BFSP2Q13515 415 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 VPS53Q5VIR6 699 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 TMCO2Q7Z6W1 182 aaPredicted RBP23.41■■□□□ 1.34
CCDC40-206ENST00000572083 SCFD2Q8WU76 684 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 TOMM22Q9NS69 142 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 HCN4Q9Y3Q4 1203 aa23.41■■□□□ 1.34
CCDC40-206ENST00000572083 LPXNO60711 386 aa23.4■■□□□ 1.34
CCDC40-206ENST00000572083 KCNJ6P48051 423 aa23.4■■□□□ 1.34
CCDC40-206ENST00000572083 RPS6P62753 249 aaKnown RBP23.4■■□□□ 1.34
CCDC40-206ENST00000572083 PTPN11Q06124 597 aaPredicted RBP23.4■■□□□ 1.34
CCDC40-206ENST00000572083 GDPD5Q8WTR4 605 aa23.4■■□□□ 1.34
CCDC40-206ENST00000572083 KHSRPQ92945 711 aaKnown RBP eCLIP23.4■■□□□ 1.34
CCDC40-206ENST00000572083 TMEM47Q9BQJ4 181 aa23.4■■□□□ 1.34
CCDC40-206ENST00000572083 ANAPC4Q9UJX5 808 aa23.4■■□□□ 1.34
CCDC40-206ENST00000572083 ORC4O43929 436 aa23.39■■□□□ 1.33
CCDC40-206ENST00000572083 KPNA6O60684 536 aa23.39■■□□□ 1.33
CCDC40-206ENST00000572083 BAIAP3O94812 1187 aa23.39■■□□□ 1.33
CCDC40-206ENST00000572083 ARIH2O95376 493 aa23.39■■□□□ 1.33
CCDC40-206ENST00000572083 TXNP10599 105 aaKnown RBP23.39■■□□□ 1.33
CCDC40-206ENST00000572083 EDNRBP24530 442 aa23.39■■□□□ 1.33
CCDC40-206ENST00000572083 MPHOSPH6Q99547 160 aaKnown RBP23.39■■□□□ 1.33
CCDC40-206ENST00000572083 TOP1P11387 765 aaKnown RBP23.38■■□□□ 1.33
CCDC40-206ENST00000572083 WDR5P61964 334 aaKnown RBP23.38■■□□□ 1.33
CCDC40-206ENST00000572083 PTGISQ16647 500 aa23.38■■□□□ 1.33
CCDC40-206ENST00000572083 RRP12Q5JTH9 1297 aaKnown RBP23.38■■□□□ 1.33
CCDC40-206ENST00000572083 TMEM31Q5JXX7 168 aa23.38■■□□□ 1.33
CCDC40-206ENST00000572083 FAM86C2PA6NEL3 165 aa23.37■■□□□ 1.33
CCDC40-206ENST00000572083 RBAK-RBAKDNI3L0D1 243 aa23.37■■□□□ 1.33
CCDC40-206ENST00000572083 DEFB103AP81534 67 aa23.37■■□□□ 1.33
CCDC40-206ENST00000572083 DNERQ8NFT8 737 aa23.37■■□□□ 1.33
CCDC40-206ENST00000572083 MTUS1Q9ULD2 1270 aa23.37■■□□□ 1.33
CCDC40-206ENST00000572083 TRIP12Q14669 1992 aaPredicted RBP23.37■■□□□ 1.33
CCDC40-206ENST00000572083 PDHBP11177 359 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 GDF6Q6KF10 455 aaPredicted RBP23.36■■□□□ 1.33
CCDC40-206ENST00000572083 CCDC155Q8N6L0 562 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 CAGE1Q8TC20 777 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 AFAP1L1Q8TED9 768 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 CTAGE1Q96RT6 745 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 ZBED2Q9BTP6 218 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 C11orf16Q9NQ32 467 aa23.36■■□□□ 1.33
CCDC40-206ENST00000572083 FGRP09769 529 aa23.35■■□□□ 1.33
CCDC40-206ENST00000572083 GPNMBQ14956 572 aa23.35■■□□□ 1.33
CCDC40-206ENST00000572083 USH1GQ495M9 461 aa23.35■■□□□ 1.33
CCDC40-206ENST00000572083 AFG1LQ8WV93 481 aa23.35■■□□□ 1.33
CCDC40-206ENST00000572083 WDR19Q8NEZ3 1342 aa23.34■■□□□ 1.33
CCDC40-206ENST00000572083 MMP3P08254 477 aa23.34■■□□□ 1.33
CCDC40-206ENST00000572083 MX1P20591 662 aa23.34■■□□□ 1.33
CCDC40-206ENST00000572083 DHX38Q92620 1227 aaKnown RBP23.34■■□□□ 1.33
CCDC40-206ENST00000572083 SELPP16109 830 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 ZNF543Q08ER8 600 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 LY6KQ17RY6 165 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 TCTN1Q2MV58 587 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 LRRC8DQ7L1W4 858 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 CHST3Q7LGC8 479 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 CD320Q9NPF0 282 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 ARIH1Q9Y4X5 557 aaPredicted RBP23.33■■□□□ 1.33
CCDC40-206ENST00000572083 BRWD1Q9NSI6 2320 aa23.33■■□□□ 1.33
CCDC40-206ENST00000572083 B4DLN1 442 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 MRPL12P52815 198 aaKnown RBP23.32■■□□□ 1.32
CCDC40-206ENST00000572083 CCDC62Q6P9F0 684 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 CNKSR3Q6P9H4 555 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 SEPT14Q6ZU15 432 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 KAT2BQ92831 832 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 TCP11L1Q9NUJ3 509 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 PNMA2Q9UL42 364 aa23.32■■□□□ 1.32
CCDC40-206ENST00000572083 GPR37L1O60883 481 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 NBNO60934 754 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 GH1P01241 217 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 ARHGAP1Q07960 439 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 ALX1Q15699 326 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 SESTD1Q86VW0 696 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 CPVLQ9H3G5 476 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 SUGCTQ9HAC7 445 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 LMCD1Q9NZU5 365 aa23.31■■□□□ 1.32
CCDC40-206ENST00000572083 GJB5O95377 273 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 FGAP02671 866 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 CKBP12277 381 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 HAND2P61296 217 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 FAM117BQ6P1L5 589 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 UBE2ZQ9H832 354 aaPredicted RBP23.3■■□□□ 1.32
CCDC40-206ENST00000572083 GTF2IRD1Q9UHL9 959 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 SIP14410 1827 aa23.3■■□□□ 1.32
CCDC40-206ENST00000572083 LINC01553A4QN01 128 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 CXCL10P02778 98 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 GOLGA8HP0CJ92 632 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 SNHG28P0DPA3 235 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 TBC1D5Q92609 795 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 FAM227BQ96M60 508 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms