RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ME3Q16798 604 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 USH1GQ495M9 461 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 C9orf50Q5SZB4 431 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 PPP1R18Q6NYC8 613 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 DPP9Q86TI2 863 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 CCDC12Q8WUD4 166 aaPredicted RBP23.73■■□□□ 1.39
VPS53-210ENST00000571456 GLT8D2Q9H1C3 349 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 HOMER2Q9NSB8 354 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 PLXNA1Q9UIW2 1896 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 SCRN1Q12765 414 aa23.72■■□□□ 1.39
VPS53-210ENST00000571456 CCDC82Q8N4S0 544 aa23.72■■□□□ 1.39
VPS53-210ENST00000571456 MSL3Q8N5Y2 521 aaKnown RBP23.72■■□□□ 1.39
VPS53-210ENST00000571456 FAM122AQ96E09 287 aa23.72■■□□□ 1.39
VPS53-210ENST00000571456 V9GY48 417 aaPredicted RBP23.72■■□□□ 1.39
VPS53-210ENST00000571456 MYO9BQ13459 2157 aa23.72■■□□□ 1.39
VPS53-210ENST00000571456 STK36Q9NRP7 1315 aa23.71■■□□□ 1.39
VPS53-210ENST00000571456 ATN1P54259 1190 aaPredicted RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 SSRP1Q08945 709 aaKnown RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 STK3Q13188 491 aa23.71■■□□□ 1.39
VPS53-210ENST00000571456 CCL14Q16627 93 aa23.71■■□□□ 1.39
VPS53-210ENST00000571456 PFKFB3Q16875 520 aaPredicted RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 ZNF467Q7Z7K2 595 aaPredicted RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 CMTR1Q8N1G2 835 aaKnown RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 CLEC4DQ8WXI8 215 aa23.71■■□□□ 1.39
VPS53-210ENST00000571456 NCOA5Q9HCD5 579 aaKnown RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 A1CFQ9NQ94 594 aaKnown RBP23.71■■□□□ 1.39
VPS53-210ENST00000571456 DNAJC25-GNG10A0A024R161 153 aa23.7■■□□□ 1.38
VPS53-210ENST00000571456 PPP1R11O60927 126 aaPredicted RBP23.7■■□□□ 1.38
VPS53-210ENST00000571456 DEXIO95424 95 aa23.7■■□□□ 1.38
VPS53-210ENST00000571456 RNF207Q6ZRF8 634 aa23.7■■□□□ 1.38
VPS53-210ENST00000571456 WASF1Q92558 559 aa23.7■■□□□ 1.38
VPS53-210ENST00000571456 MPHOSPH6Q99547 160 aaKnown RBP23.7■■□□□ 1.38
VPS53-210ENST00000571456 LARP6Q9BRS8 491 aaKnown RBP23.7■■□□□ 1.38
VPS53-210ENST00000571456 LLPHQ9BRT6 129 aaKnown RBP23.7■■□□□ 1.38
VPS53-210ENST00000571456 CYP39A1Q9NYL5 469 aa23.7■■□□□ 1.38
VPS53-210ENST00000571456 ADD3Q9UEY8 706 aaKnown RBP23.7■■□□□ 1.38
VPS53-210ENST00000571456 B4DLN1 442 aa23.69■■□□□ 1.38
VPS53-210ENST00000571456 SCG2P13521 617 aa23.69■■□□□ 1.38
VPS53-210ENST00000571456 MRPL12P52815 198 aaKnown RBP23.69■■□□□ 1.38
VPS53-210ENST00000571456 RTP1P59025 263 aa23.69■■□□□ 1.38
VPS53-210ENST00000571456 MUM1L1Q5H9M0 696 aa23.69■■□□□ 1.38
VPS53-210ENST00000571456 OLFML2BQ68BL8 750 aa23.69■■□□□ 1.38
VPS53-210ENST00000571456 NSMFQ6X4W1 530 aa23.69■■□□□ 1.38
VPS53-210ENST00000571456 TMEM265A0A087WTH1 108 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 NFIBO00712 420 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 ZNF792Q3KQV3 632 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 NOL8Q76FK4 1167 aaKnown RBP23.68■■□□□ 1.38
VPS53-210ENST00000571456 CCDC148Q8NFR7 591 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 SLC26A6Q9BXS9 759 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 SH3GLB2Q9NR46 395 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 BARHL2Q9NY43 387 aa23.68■■□□□ 1.38
VPS53-210ENST00000571456 HEATR3Q7Z4Q2 680 aa23.67■■□□□ 1.38
VPS53-210ENST00000571456 FAM133AQ8N9E0 248 aa23.67■■□□□ 1.38
VPS53-210ENST00000571456 DNERQ8NFT8 737 aa23.67■■□□□ 1.38
VPS53-210ENST00000571456 PIBF1Q8WXW3 757 aa23.67■■□□□ 1.38
VPS53-210ENST00000571456 CUL5Q93034 780 aa23.67■■□□□ 1.38
VPS53-210ENST00000571456 ESYT2A0FGR8 921 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 PTPDC1A2A3K4 754 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 PIK3CDO00329 1044 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 XBP1P17861 261 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 HSD17B4P51659 736 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 RPS6P62753 249 aaKnown RBP23.66■■□□□ 1.38
VPS53-210ENST00000571456 MCTP2Q6DN12 878 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 USP38Q8NB14 1042 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 PHKBQ93100 1093 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 NRBP1Q9UHY1 535 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 ATP11BQ9Y2G3 1177 aa23.66■■□□□ 1.38
VPS53-210ENST00000571456 ASB14A6NK59 587 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 GCOM1H8Y6P7 765 aaPredicted RBP23.65■■□□□ 1.38
VPS53-210ENST00000571456 DNM1LO00429 736 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 COBLO75128 1261 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 POLR2MP0CAP2 368 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 NAPAP54920 295 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 HMGN5P82970 282 aaKnown RBP23.65■■□□□ 1.38
VPS53-210ENST00000571456 BAATQ14032 418 aaPredicted RBP23.65■■□□□ 1.38
VPS53-210ENST00000571456 MFSD14CQ5VZR4 134 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 MAMDC4Q6UXC1 1216 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 MAML3Q96JK9 1138 aa23.65■■□□□ 1.38
VPS53-210ENST00000571456 SYNGAP1Q96PV0 1343 aa23.64■■□□□ 1.38
VPS53-210ENST00000571456 MSCO60682 206 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 LARGE1O95461 756 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 GNA11P29992 359 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 PKN1Q16512 942 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 WWC2Q6AWC2 1192 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 NECAB1Q8N987 351 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 BADQ92934 168 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 SNX21Q969T3 373 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 PSTPIP2Q9H939 334 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 DDX20Q9UHI6 824 aaKnown RBP23.64■■□□□ 1.37
VPS53-210ENST00000571456 KIF3AQ9Y496 699 aa23.64■■□□□ 1.37
VPS53-210ENST00000571456 STXBP3O00186 592 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 CFBP00751 764 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 PGK2P07205 417 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 GALNT17Q6IS24 598 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 BICD2Q8TD16 824 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 TMX3Q96JJ7 454 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 C6orf50Q9HD87 102 aa23.63■■□□□ 1.37
VPS53-210ENST00000571456 PRDM5Q9NQX1 630 aaPredicted RBP23.63■■□□□ 1.37
VPS53-210ENST00000571456 hCG_1642624A0A1W2PR95 340 aa23.62■■□□□ 1.37
VPS53-210ENST00000571456 OPLAHO14841 1288 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms