RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 BMP8AQ7Z5Y6 402 aa14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 AACSQ86V21 672 aa14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 PABPC5Q96DU9 382 aaKnown RBP14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 MRPL38Q96DV4 380 aaKnown RBP14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 MTG1Q9BT17 334 aaPredicted RBP14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 POLR3EQ9NVU0 708 aa14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 CYP39A1Q9NYL5 469 aa14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 TTC41PQ6P2S7 1318 aa14.11□□□□□ -0.15
VPS9D1-207ENST00000568691 RBM47A0AV96 593 aaKnown RBP14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 SMARCA5O60264 1052 aaPredicted RBP14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 GFRA3O60609 400 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 ADD2P35612 726 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 PTPN5P54829 565 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 SNAP25P60880 206 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 DLX2Q07687 328 aaPredicted RBP14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 MBTPS1Q14703 1052 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 FAM47CQ5HY64 1035 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 FAM117BQ6P1L5 589 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 NFRKBQ6P4R8 1299 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 CLASRPQ8N2M8 674 aaKnown RBP14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 RETREG2Q8NC44 543 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 MKL1Q969V6 931 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 GPATCH3Q96I76 525 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 ZBED2Q9BTP6 218 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 VTA1Q9NP79 307 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 CLIP2Q9UDT6 1046 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 FEM1BQ9UK73 627 aa14.1□□□□□ -0.15
VPS9D1-207ENST00000568691 FOXK2Q01167 660 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 TTF1Q15361 905 aaPredicted RBP14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 RNF135Q8IUD6 432 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 LRRC47Q8N1G4 583 aaKnown RBP14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 FBXO22Q8NEZ5 403 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 SP7Q8TDD2 431 aaPredicted RBP14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 EDAQ92838 391 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 COPS5Q92905 334 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 TRERF1Q96PN7 1200 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 WDR11Q9BZH6 1224 aa14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 TRIP12Q14669 1992 aaPredicted RBP14.09□□□□□ -0.15
VPS9D1-207ENST00000568691 GSPT1P15170 499 aaKnown RBP14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 RBL2Q08999 1139 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 BFSP2Q13515 415 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 CTC1Q2NKJ3 1217 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 GDF6Q6KF10 455 aaPredicted RBP14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 CNKSR3Q6P9H4 555 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 RASGRP2Q7LDG7 609 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 STK11IPQ8N1F8 1099 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 WNT8BQ93098 351 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 DNAJC2Q99543 621 aaKnown RBP14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 UPF2Q9HAU5 1272 aaKnown RBP14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 RIF1Q5UIP0 2472 aaKnown RBP14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 KMT2EQ8IZD2 1858 aa14.08□□□□□ -0.16
VPS9D1-207ENST00000568691 A6NJR5 290 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 CDC45O75419 566 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 HTRA4P83105 476 aaPredicted RBP14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 PTPN11Q06124 597 aaPredicted RBP14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 SMAD2Q15796 467 aaKnown RBP14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 LRRFIP1Q32MZ4 808 aaKnown RBP14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 EPC2Q52LR7 807 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 LRRC8DQ7L1W4 858 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 BANK1Q8NDB2 785 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 GMCL1P1Q8NEA9 526 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 OR6J1Q8NGC5 347 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 AFAP1L1Q8TED9 768 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 CEP95Q96GE4 821 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 IL1RAPL2Q9NP60 686 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 CTDP1Q9Y5B0 961 aaPredicted RBP14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 PLXNA3P51805 1871 aa14.07□□□□□ -0.16
VPS9D1-207ENST00000568691 ABHD14A-ACY1A0A1B0GW23 586 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 TMEM221A6NGB7 291 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 TMEM232C9JQI7 657 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 M0R296 226 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 MBTPS2O43462 519 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 ALAS1P13196 640 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 SELPP16109 830 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 CPT1AP50416 773 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 VCPP55072 806 aaKnown RBP14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 CLUL1Q15846 466 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 PTGISQ16647 500 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 TRIM71Q2Q1W2 868 aaKnown RBP14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 TRIM67Q6ZTA4 783 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 OTUD7AQ8TE49 926 aaPredicted RBP14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 KAT2BQ92831 832 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 PUS7LQ9H0K6 701 aaKnown RBP14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 MTMR4Q9NYA4 1195 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 SLC4A4Q9Y6R1 1079 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 COL4A6Q14031 1691 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 VPS13AQ96RL7 3174 aa14.06□□□□□ -0.16
VPS9D1-207ENST00000568691 ATG2AQ2TAZ0 1938 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 H3BNC9 293 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 LGR5O75473 907 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 RGS20O76081 388 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 ARIH2O95376 493 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 CKBP12277 381 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 BMP3P12645 472 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 ANP32AP39687 249 aaKnown RBP14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 ALDH5A1P51649 535 aaPredicted RBP14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 TKFCQ3LXA3 575 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 SBK1Q52WX2 424 aa14.05□□□□□ -0.16
VPS9D1-207ENST00000568691 SLFN13Q68D06 897 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms