RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 PWP2Q15269 919 aaKnown RBP18.21■□□□□ 0.51
NME3-211ENST00000568561 RPUSD2Q8IZ73 545 aaKnown RBP18.21■□□□□ 0.51
NME3-211ENST00000568561 MICALL1Q8N3F8 863 aa18.21■□□□□ 0.51
NME3-211ENST00000568561 SCFD2Q8WU76 684 aa18.21■□□□□ 0.51
NME3-211ENST00000568561 TBC1D5Q92609 795 aa18.21■□□□□ 0.51
NME3-211ENST00000568561 THEGQ9P2T0 379 aa18.21■□□□□ 0.51
NME3-211ENST00000568561 PRRC2BQ5JSZ5 2229 aaKnown RBP18.21■□□□□ 0.5
NME3-211ENST00000568561 RBAK-RBAKDNI3L0D1 243 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 KDM4AO75164 1064 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 SUPT20HL2P0C7V6 817 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 ATP2A2P16615 1042 aaKnown RBP18.2■□□□□ 0.5
NME3-211ENST00000568561 SDSP20132 328 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 CDC37Q16543 378 aaPredicted RBP18.2■□□□□ 0.5
NME3-211ENST00000568561 ESR2Q92731 530 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 TTC14Q96N46 770 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 RNF41Q9H4P4 317 aaPredicted RBP18.2■□□□□ 0.5
NME3-211ENST00000568561 RAD50Q92878 1312 aa18.2■□□□□ 0.5
NME3-211ENST00000568561 TCF20Q9UGU0 1960 aaKnown RBP18.19■□□□□ 0.5
NME3-211ENST00000568561 A6NJR5 290 aa18.19■□□□□ 0.5
NME3-211ENST00000568561 BRDTQ58F21 947 aaPredicted RBP18.19■□□□□ 0.5
NME3-211ENST00000568561 PNMA1Q8ND90 353 aa18.19■□□□□ 0.5
NME3-211ENST00000568561 DNERQ8NFT8 737 aa18.19■□□□□ 0.5
NME3-211ENST00000568561 MPHOSPH6Q99547 160 aaKnown RBP18.19■□□□□ 0.5
NME3-211ENST00000568561 PCDHA11Q9Y5I1 949 aa18.19■□□□□ 0.5
NME3-211ENST00000568561 ZNF213O14771 459 aa18.18■□□□□ 0.5
NME3-211ENST00000568561 NKRFO15226 690 aaKnown RBP eCLIP18.18■□□□□ 0.5
NME3-211ENST00000568561 PCP11498 1178 aaKnown RBP18.18■□□□□ 0.5
NME3-211ENST00000568561 GPATCH4Q5T3I0 446 aaKnown RBP18.18■□□□□ 0.5
NME3-211ENST00000568561 CWC27Q6UX04 472 aaKnown RBP18.18■□□□□ 0.5
NME3-211ENST00000568561 CERS4Q9HA82 394 aa18.18■□□□□ 0.5
NME3-211ENST00000568561 COL20A1Q9P218 1284 aa18.18■□□□□ 0.5
NME3-211ENST00000568561 PNMA2Q9UL42 364 aa18.18■□□□□ 0.5
NME3-211ENST00000568561 MYH7BA7E2Y1 1941 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 B4E1Z4 1266 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 RFXAPO00287 272 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 CA3P07451 260 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 NFRKBQ6P4R8 1299 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 SEPT14Q6ZU15 432 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 CHST3Q7LGC8 479 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 DGKHQ86XP1 1220 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 PLEKHM2Q8IWE5 1019 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 ADGRF4Q8IZF3 695 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 AFG1LQ8WV93 481 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 TAAR1Q96RJ0 339 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 KAT14Q9H8E8 782 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 NOD1Q9Y239 953 aa18.17■□□□□ 0.5
NME3-211ENST00000568561 COL4A4P53420 1690 aaPredicted RBP18.17■□□□□ 0.5
NME3-211ENST00000568561 TNFRSF10AO00220 468 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 DHX16O60231 1041 aaKnown RBP18.16■□□□□ 0.5
NME3-211ENST00000568561 ARHGEF15O94989 841 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 PFKMP08237 780 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 MFAP1P55081 439 aaKnown RBP18.16■□□□□ 0.5
NME3-211ENST00000568561 LY6KQ17RY6 165 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 QRICH1Q2TAL8 776 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 TICAM2Q86XR7 235 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 SMC5Q8IY18 1101 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 SYTL5Q8TDW5 730 aaPredicted RBP18.16■□□□□ 0.5
NME3-211ENST00000568561 ADAMTS19Q8TE59 1207 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 ATXN2LQ8WWM7 1075 aaKnown RBP18.16■□□□□ 0.5
NME3-211ENST00000568561 ASB2Q96Q27 587 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 FTOQ9C0B1 505 aaKnown RBP eCLIP18.16■□□□□ 0.5
NME3-211ENST00000568561 DIAPH3Q9NSV4 1193 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 ABCB11O95342 1321 aa18.16■□□□□ 0.5
NME3-211ENST00000568561 EPOPA6NHQ4 379 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 B4DLN1 442 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 MMP3P08254 477 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 IQCF3P0C7M6 154 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 ACTN1P12814 892 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 MRPL12P52815 198 aaKnown RBP18.15■□□□□ 0.5
NME3-211ENST00000568561 ARHGAP1Q07960 439 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 TMEM67Q5HYA8 995 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 CCDC62Q6P9F0 684 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 CHD1LQ86WJ1 897 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 IQCA1Q86XH1 822 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 ENAHQ8N8S7 591 aaPredicted RBP18.15■□□□□ 0.5
NME3-211ENST00000568561 RETREG2Q8NC44 543 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 ZSCAN10Q96SZ4 725 aaPredicted RBP18.15■□□□□ 0.5
NME3-211ENST00000568561 VAT1LQ9HCJ6 419 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 XIRP2A4UGR9 3374 aa18.15■□□□□ 0.5
NME3-211ENST00000568561 PITPNM1O00562 1244 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 KPNA6O60684 536 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 IGHDP01880 384 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 EIF2AK2P19525 551 aaKnown RBP18.14■□□□□ 0.49
NME3-211ENST00000568561 RFC2P35250 354 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 MRPS5P82675 430 aaKnown RBP18.14■□□□□ 0.49
NME3-211ENST00000568561 PTGISQ16647 500 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 SPRED2Q7Z698 418 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 RGS22Q8NE09 1264 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 CTAGE1Q96RT6 745 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 RMDN3Q96TC7 470 aa18.14■□□□□ 0.49
NME3-211ENST00000568561 GH1P01241 217 aa18.13■□□□□ 0.49
NME3-211ENST00000568561 TFF2Q03403 129 aa18.13■□□□□ 0.49
NME3-211ENST00000568561 PTPN11Q06124 597 aaPredicted RBP18.13■□□□□ 0.49
NME3-211ENST00000568561 BFSP2Q13515 415 aa18.13■□□□□ 0.49
NME3-211ENST00000568561 ASPRV1Q53RT3 343 aa18.13■□□□□ 0.49
NME3-211ENST00000568561 KRT40Q6A162 431 aa18.13■□□□□ 0.49
NME3-211ENST00000568561 GDF6Q6KF10 455 aaPredicted RBP18.13■□□□□ 0.49
NME3-211ENST00000568561 TMCO2Q7Z6W1 182 aaPredicted RBP18.13■□□□□ 0.49
NME3-211ENST00000568561 NSUN6Q8TEA1 469 aaKnown RBP18.13■□□□□ 0.49
NME3-211ENST00000568561 KAT2BQ92831 832 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms