RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 A6NJR5 290 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 B4E1Z4 1266 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 SUPT20HL2P0C7V6 817 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 CDC37Q16543 378 aaPredicted RBP17.48■□□□□ 0.39
CLN3-236ENST00000568558 BRDTQ58F21 947 aaPredicted RBP17.48■□□□□ 0.39
CLN3-236ENST00000568558 CCDC178Q5BJE1 867 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 ANKS1AQ92625 1134 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 COPS5Q92905 334 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 PRDM12Q9H4Q4 367 aa17.48■□□□□ 0.39
CLN3-236ENST00000568558 GPHNQ9NQX3 736 aaPredicted RBP17.48■□□□□ 0.39
CLN3-236ENST00000568558 TET1Q8NFU7 2136 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 B4DLN1 442 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 TXNP10599 105 aaKnown RBP17.47■□□□□ 0.39
CLN3-236ENST00000568558 CYP2C9P11712 490 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 MRPL12P52815 198 aaKnown RBP17.47■□□□□ 0.39
CLN3-236ENST00000568558 NBPF20Q3BBV1 942 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 DSCC1Q9BVC3 393 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 MAF1Q9H063 256 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 NKX2-4Q9H2Z4 354 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 KAT14Q9H8E8 782 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 YBX2Q9Y2T7 364 aaKnown RBP17.47■□□□□ 0.39
CLN3-236ENST00000568558 ABCB11O95342 1321 aa17.47■□□□□ 0.39
CLN3-236ENST00000568558 CHD7Q9P2D1 2997 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 HIP1O00291 1037 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 KPNA6O60684 536 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 ARIH2O95376 493 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 PFKMP08237 780 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 TTLL4Q14679 1199 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 ASPRV1Q53RT3 343 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 FAM47CQ5HY64 1035 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 NFRKBQ6P4R8 1299 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 ADGRF4Q8IZF3 695 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 ENAHQ8N8S7 591 aaPredicted RBP17.46■□□□□ 0.39
CLN3-236ENST00000568558 TBC1D5Q92609 795 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 ZSCAN10Q96SZ4 725 aaPredicted RBP17.46■□□□□ 0.39
CLN3-236ENST00000568558 ZSWIM5Q9P217 1185 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 SLC4A7Q9Y6M7 1214 aa17.46■□□□□ 0.39
CLN3-236ENST00000568558 TTC28Q96AY4 2481 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 PTPN11Q06124 597 aaPredicted RBP17.45■□□□□ 0.38
CLN3-236ENST00000568558 ADGRE1Q14246 886 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 IMMTQ16891 758 aaKnown RBP17.45■□□□□ 0.38
CLN3-236ENST00000568558 CCDC62Q6P9F0 684 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 EXOC6Q8TAG9 804 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 SYTL5Q8TDW5 730 aaPredicted RBP17.45■□□□□ 0.38
CLN3-236ENST00000568558 PPP1R13LQ8WUF5 828 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 SYMPKQ92797 1274 aaKnown RBP17.45■□□□□ 0.38
CLN3-236ENST00000568558 SLC28A3Q9HAS3 691 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 COL20A1Q9P218 1284 aa17.45■□□□□ 0.38
CLN3-236ENST00000568558 ZBBXA8MT70 800 aa17.44■□□□□ 0.38
CLN3-236ENST00000568558 RABGGTBP53611 331 aa17.44■□□□□ 0.38
CLN3-236ENST00000568558 QRICH1Q2TAL8 776 aa17.44■□□□□ 0.38
CLN3-236ENST00000568558 TAAR1Q96RJ0 339 aa17.44■□□□□ 0.38
CLN3-236ENST00000568558 PITPNM1O00562 1244 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 PARP1P09874 1014 aaKnown RBP17.43■□□□□ 0.38
CLN3-236ENST00000568558 TJAP1Q5JTD0 557 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 DEFB128Q7Z7B8 93 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 MCF2L2Q86YR7 1114 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 NSUN6Q8TEA1 469 aaKnown RBP17.43■□□□□ 0.38
CLN3-236ENST00000568558 PPM1EQ8WY54 764 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 KRT23Q9C075 422 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 CNNM2Q9H8M5 875 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 JMJD4Q9H9V9 463 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 PRDM6Q9NQX0 595 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 CTNNA3Q9UI47 895 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 PCDHA11Q9Y5I1 949 aa17.43■□□□□ 0.38
CLN3-236ENST00000568558 MUC3AQ02505 3323 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 DHX16O60231 1041 aaKnown RBP17.42■□□□□ 0.38
CLN3-236ENST00000568558 GH1P01241 217 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 MMP3P08254 477 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 ATP2A2P16615 1042 aaKnown RBP17.42■□□□□ 0.38
CLN3-236ENST00000568558 RFC2P35250 354 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 ARHGAP1Q07960 439 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 STXBP2Q15833 593 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 SEPT14Q6ZU15 432 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 FBXO11Q86XK2 927 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 AFG1LQ8WV93 481 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 IWS1Q96ST2 819 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 RMDN3Q96TC7 470 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 UBAC1Q9BSL1 405 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 IL25Q9H293 177 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 MRPL11Q9Y3B7 192 aaKnown RBP17.42■□□□□ 0.38
CLN3-236ENST00000568558 TRANK1O15050 2925 aa17.42■□□□□ 0.38
CLN3-236ENST00000568558 BAZ2BQ9UIF8 2168 aaKnown RBP17.42■□□□□ 0.38
CLN3-236ENST00000568558 IQCF3P0C7M6 154 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 ACTN1P12814 892 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 MYOGP15173 224 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 IGFBP4P22692 258 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 LY6KQ17RY6 165 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 PPP2R2DQ66LE6 453 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 VAT1LQ9HCJ6 419 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 REV3LO60673 3130 aa17.41■□□□□ 0.38
CLN3-236ENST00000568558 BFSP2Q13515 415 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 SEC23AQ15436 765 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 IFIT1BQ5T764 474 aaKnown RBP17.4■□□□□ 0.38
CLN3-236ENST00000568558 STAG2Q8N3U4 1231 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 RETREG2Q8NC44 543 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 PXMP2Q9NR77 195 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 THEGQ9P2T0 379 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 NOD1Q9Y239 953 aa17.4■□□□□ 0.38
CLN3-236ENST00000568558 COL4A4P53420 1690 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms