RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ALPK3Q96L96 1907 aa21.67■■□□□ 1.06
CLN3-227ENST00000567495 A0A0U1RQG5 324 aaPredicted RBP21.67■■□□□ 1.06
CLN3-227ENST00000567495 TTLL4Q14679 1199 aa21.67■■□□□ 1.06
CLN3-227ENST00000567495 PPP2R5BQ15173 497 aa21.67■■□□□ 1.06
CLN3-227ENST00000567495 STXBP2Q15833 593 aa21.67■■□□□ 1.06
CLN3-227ENST00000567495 ARHGEF16Q5VV41 709 aa21.67■■□□□ 1.06
CLN3-227ENST00000567495 TAAR1Q96RJ0 339 aa21.67■■□□□ 1.06
CLN3-227ENST00000567495 UBE2OQ9C0C9 1292 aaKnown RBP21.67■■□□□ 1.06
CLN3-227ENST00000567495 GCOM1H8Y6P7 765 aaPredicted RBP21.66■■□□□ 1.06
CLN3-227ENST00000567495 OPLAHO14841 1288 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 EPB41L2O43491 1005 aaKnown RBP21.66■■□□□ 1.06
CLN3-227ENST00000567495 PQBP1O60828 265 aaKnown RBP21.66■■□□□ 1.06
CLN3-227ENST00000567495 CLTBP09497 229 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 POLR2MP0CAP2 368 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 CPT1AP50416 773 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 MYL10Q9BUA6 226 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 PRDM5Q9NQX1 630 aaPredicted RBP21.66■■□□□ 1.06
CLN3-227ENST00000567495 PDLIM7Q9NR12 457 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 COL20A1Q9P218 1284 aa21.66■■□□□ 1.06
CLN3-227ENST00000567495 SEC63Q9UGP8 760 aaKnown RBP21.66■■□□□ 1.06
CLN3-227ENST00000567495 MCM3APO60318 1980 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 ARVCFO00192 962 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 EIF3JO75822 258 aaKnown RBP21.65■■□□□ 1.06
CLN3-227ENST00000567495 CDK7P50613 346 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 MDM2Q00987 491 aaPredicted RBP21.65■■□□□ 1.06
CLN3-227ENST00000567495 BEX3Q00994 111 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 EXOSC10Q01780 885 aaKnown RBP21.65■■□□□ 1.06
CLN3-227ENST00000567495 RASEFQ8IZ41 740 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 FANCBQ8NB91 859 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 KCNB2Q92953 911 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 PXMP2Q9NR77 195 aa21.65■■□□□ 1.06
CLN3-227ENST00000567495 DNAH12Q6ZR08 3092 aa21.64■■□□□ 1.06
CLN3-227ENST00000567495 KIAA0355O15063 1070 aa21.64■■□□□ 1.05
CLN3-227ENST00000567495 KPNA6O60684 536 aa21.64■■□□□ 1.05
CLN3-227ENST00000567495 NR3C2P08235 984 aa21.64■■□□□ 1.05
CLN3-227ENST00000567495 IRX5P78411 483 aaPredicted RBP21.64■■□□□ 1.05
CLN3-227ENST00000567495 CXCL17Q6UXB2 119 aa21.64■■□□□ 1.05
CLN3-227ENST00000567495 TDHQ8IZJ6 230 aa21.64■■□□□ 1.05
CLN3-227ENST00000567495 POLR3EQ9NVU0 708 aa21.64■■□□□ 1.05
CLN3-227ENST00000567495 TXNP10599 105 aaKnown RBP21.63■■□□□ 1.05
CLN3-227ENST00000567495 HSPA4P34932 840 aa21.63■■□□□ 1.05
CLN3-227ENST00000567495 OR6J1Q8NGC5 347 aa21.63■■□□□ 1.05
CLN3-227ENST00000567495 LRRC2Q9BYS8 371 aa21.63■■□□□ 1.05
CLN3-227ENST00000567495 TMEM39AQ9NV64 488 aa21.63■■□□□ 1.05
CLN3-227ENST00000567495 EIF2AK2P19525 551 aaKnown RBP21.62■■□□□ 1.05
CLN3-227ENST00000567495 RCAN1P53805 252 aa21.62■■□□□ 1.05
CLN3-227ENST00000567495 COL9A3Q14050 684 aaPredicted RBP21.62■■□□□ 1.05
CLN3-227ENST00000567495 CCDC62Q6P9F0 684 aa21.62■■□□□ 1.05
CLN3-227ENST00000567495 SRBD1Q8N5C6 995 aaKnown RBP21.62■■□□□ 1.05
CLN3-227ENST00000567495 RBM28Q9NW13 759 aaKnown RBP21.62■■□□□ 1.05
CLN3-227ENST00000567495 TRIM43BA6NCK2 446 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 A6NJR5 290 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 TLR3O15455 904 aaKnown RBP21.61■■□□□ 1.05
CLN3-227ENST00000567495 HOXA13P31271 388 aaPredicted RBP21.61■■□□□ 1.05
CLN3-227ENST00000567495 FAAP100Q0VG06 881 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 ADCK5Q3MIX3 580 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 TMEM63BQ5T3F8 832 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 KCNV1Q6PIU1 500 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 APOA5Q6Q788 366 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 SEPT14Q6ZU15 432 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 SH3RF1Q7Z6J0 888 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 MICU3Q86XE3 530 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 SLC43A3Q8NBI5 491 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 PIBF1Q8WXW3 757 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 CUL5Q93034 780 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 TRIM43Q96BQ3 446 aaPredicted RBP21.61■■□□□ 1.05
CLN3-227ENST00000567495 PDCD2LQ9BRP1 358 aa21.61■■□□□ 1.05
CLN3-227ENST00000567495 PLEKHA8P1O95397 391 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 RAG1P15918 1043 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 RXRAP19793 462 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 PSMA5P28066 241 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 FGD1P98174 961 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 ITGA7Q13683 1181 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 LRIT3Q3SXY7 679 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 TMTC3Q6ZXV5 915 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 VSIG10LQ86VR7 867 aa21.6■■□□□ 1.05
CLN3-227ENST00000567495 LCTP09848 1927 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 PIK3CDO00329 1044 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 ZBTB43O43298 467 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 GH1P01241 217 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 TEX2Q8IWB9 1127 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 BADQ92934 168 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 MTG1Q9BT17 334 aaPredicted RBP21.59■■□□□ 1.05
CLN3-227ENST00000567495 TBX21Q9UL17 535 aa21.59■■□□□ 1.05
CLN3-227ENST00000567495 LRRC37A2A6NM11 1700 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 STAM2O75886 525 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 TGFB3P10600 412 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 PTGS1P23219 599 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 CCND2P30279 289 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 PURAQ00577 322 aaKnown RBP21.58■■□□□ 1.05
CLN3-227ENST00000567495 PGM5Q15124 567 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 RTN1Q16799 776 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 BLOC1S2Q6QNY1 142 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 FCHSD1Q86WN1 690 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 FAM126BQ8IXS8 530 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 JAKMIP1Q96N16 626 aaKnown RBP21.58■■□□□ 1.05
CLN3-227ENST00000567495 SNX14Q9Y5W7 946 aa21.58■■□□□ 1.05
CLN3-227ENST00000567495 CCDC196A0A1B0GTZ2 297 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 ARIH2O95376 493 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 TIMP1P01033 207 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms