RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 DHX16O60231 1041 aaKnown RBP21.85■■□□□ 1.09
CLN3-218ENST00000565688 TTC22Q5TAA0 569 aa21.85■■□□□ 1.09
CLN3-218ENST00000565688 FBXO11Q86XK2 927 aa21.85■■□□□ 1.09
CLN3-218ENST00000565688 RPUSD2Q8IZ73 545 aaKnown RBP21.85■■□□□ 1.09
CLN3-218ENST00000565688 NSUN6Q8TEA1 469 aaKnown RBP21.85■■□□□ 1.09
CLN3-218ENST00000565688 RUFY2Q8WXA3 655 aa21.85■■□□□ 1.09
CLN3-218ENST00000565688 ZNF576Q9H609 170 aa21.85■■□□□ 1.09
CLN3-218ENST00000565688 CHD9Q3L8U1 2897 aa21.85■■□□□ 1.09
CLN3-218ENST00000565688 UMODL1Q5DID0 1318 aa21.84■■□□□ 1.09
CLN3-218ENST00000565688 CCL23P55773 120 aa21.84■■□□□ 1.09
CLN3-218ENST00000565688 QRICH1Q2TAL8 776 aa21.84■■□□□ 1.09
CLN3-218ENST00000565688 SYTL5Q8TDW5 730 aaPredicted RBP21.84■■□□□ 1.09
CLN3-218ENST00000565688 IWS1Q96ST2 819 aa21.84■■□□□ 1.09
CLN3-218ENST00000565688 JMJD4Q9H9V9 463 aa21.84■■□□□ 1.09
CLN3-218ENST00000565688 SUPT16HQ9Y5B9 1047 aaKnown RBP21.84■■□□□ 1.09
CLN3-218ENST00000565688 PRUNE2Q8WUY3 3088 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 PDE4AP27815 886 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 TRDNQ13061 729 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 GRIN2CQ14957 1233 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 NFRKBQ6P4R8 1299 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 PBX4Q9BYU1 374 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 WNT8AQ9H1J5 351 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 VAT1LQ9HCJ6 419 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 TRMT13Q9NUP7 481 aaKnown RBP21.83■■□□□ 1.09
CLN3-218ENST00000565688 MSRAQ9UJ68 235 aa21.83■■□□□ 1.09
CLN3-218ENST00000565688 GSPT1P15170 499 aaKnown RBP21.82■■□□□ 1.08
CLN3-218ENST00000565688 PTPN11Q06124 597 aaPredicted RBP21.82■■□□□ 1.08
CLN3-218ENST00000565688 RAB30Q15771 203 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 STXBP2Q15833 593 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 NBPF20Q3BBV1 942 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 TBC1D5Q92609 795 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 TAAR1Q96RJ0 339 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 RMDN3Q96TC7 470 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 IL25Q9H293 177 aa21.82■■□□□ 1.08
CLN3-218ENST00000565688 U3KPZ7 1027 aaPredicted RBP21.82■■□□□ 1.08
CLN3-218ENST00000565688 GRXCR1A8MXD5 290 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 PFKMP08237 780 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 PBX2P40425 430 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 SEC23AQ15436 765 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 FAM47CQ5HY64 1035 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 CCDC62Q6P9F0 684 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 OTOP2Q7RTS6 562 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 COPS5Q92905 334 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 AMNQ9BXJ7 453 aa21.81■■□□□ 1.08
CLN3-218ENST00000565688 CXXC1Q9P0U4 656 aaPredicted RBP21.81■■□□□ 1.08
CLN3-218ENST00000565688 SCN10AQ9Y5Y9 1956 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 KLRF2D3W0D1 207 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 ARIH2O95376 493 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 CYP2C9P11712 490 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 ARHGEF16Q5VV41 709 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 SEPT14Q6ZU15 432 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 COL20A1Q9P218 1284 aa21.8■■□□□ 1.08
CLN3-218ENST00000565688 GH1P01241 217 aa21.79■■□□□ 1.08
CLN3-218ENST00000565688 TRAF1Q13077 416 aa21.79■■□□□ 1.08
CLN3-218ENST00000565688 CYB5R4Q7L1T6 521 aa21.79■■□□□ 1.08
CLN3-218ENST00000565688 STAG2Q8N3U4 1231 aa21.79■■□□□ 1.08
CLN3-218ENST00000565688 SCLYQ96I15 445 aa21.79■■□□□ 1.08
CLN3-218ENST00000565688 MAP3K20Q9NYL2 800 aaKnown RBP21.79■■□□□ 1.08
CLN3-218ENST00000565688 SLC4A7Q9Y6M7 1214 aa21.79■■□□□ 1.08
CLN3-218ENST00000565688 PITPNM1O00562 1244 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 ZBTB5O15062 677 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 EIF3JO75822 258 aaKnown RBP21.78■■□□□ 1.08
CLN3-218ENST00000565688 CFBP00751 764 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 CHMLP26374 656 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 RFC2P35250 354 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 HSD17B4P51659 736 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 GHRHRQ02643 423 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 SAMD3Q8N6K7 520 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 AFG1LQ8WV93 481 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 MTMR8Q96EF0 704 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 GAS2L1Q99501 681 aaPredicted RBP21.78■■□□□ 1.08
CLN3-218ENST00000565688 COL25A1Q9BXS0 654 aaPredicted RBP21.78■■□□□ 1.08
CLN3-218ENST00000565688 MAD2L2Q9UI95 211 aa21.78■■□□□ 1.08
CLN3-218ENST00000565688 MYH6P13533 1939 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 ERICH2A1L162 156 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 PALM3A6NDB9 673 aaPredicted RBP21.77■■□□□ 1.08
CLN3-218ENST00000565688 EIF2AK2P19525 551 aaKnown RBP21.77■■□□□ 1.08
CLN3-218ENST00000565688 SART3Q15020 963 aaKnown RBP21.77■■□□□ 1.08
CLN3-218ENST00000565688 LY6KQ17RY6 165 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 RALYLQ86SE5 291 aaKnown RBP21.77■■□□□ 1.08
CLN3-218ENST00000565688 RETREG2Q8NC44 543 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 PXMP2Q9NR77 195 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 NOD1Q9Y239 953 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 PCDHA1Q9Y5I3 950 aa21.77■■□□□ 1.08
CLN3-218ENST00000565688 IFIT3O14879 490 aaKnown RBP21.76■■□□□ 1.07
CLN3-218ENST00000565688 NR3C2P08235 984 aa21.76■■□□□ 1.07
CLN3-218ENST00000565688 MMP3P08254 477 aa21.76■■□□□ 1.07
CLN3-218ENST00000565688 CYP21A2P08686 494 aa21.76■■□□□ 1.07
CLN3-218ENST00000565688 CASTP20810 708 aaKnown RBP21.76■■□□□ 1.07
CLN3-218ENST00000565688 ARHGAP1Q07960 439 aa21.76■■□□□ 1.07
CLN3-218ENST00000565688 BFSP2Q13515 415 aa21.76■■□□□ 1.07
CLN3-218ENST00000565688 EMID1Q96A84 441 aaPredicted RBP21.76■■□□□ 1.07
CLN3-218ENST00000565688 SLC28A3Q9HAS3 691 aa21.76■■□□□ 1.07
CLN3-218ENST00000565688 DDX41Q9UJV9 622 aaKnown RBP21.76■■□□□ 1.07
CLN3-218ENST00000565688 ZBBXA8MT70 800 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 OPLAHO14841 1288 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 ACTN1P12814 892 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 PTH1RQ03431 593 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 GRM4Q14833 912 aa21.75■■□□□ 1.07
CLN3-218ENST00000565688 DGKDQ16760 1214 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms