RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PALM3A6NDB9 673 aaPredicted RBP20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 SUPT20HL2P0C7V6 817 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 TXNP10599 105 aaKnown RBP20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 PTH1RQ03431 593 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 TRDNQ13061 729 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 TTLL4Q14679 1199 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 ZNF365Q70YC5 407 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 STAG2Q8N3U4 1231 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 HERVK_113Q902F9 699 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 TAAR1Q96RJ0 339 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 MAP3K20Q9NYL2 800 aaKnown RBP20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 MAD2L2Q9UI95 211 aa20.07■□□□□ 0.8
VPS9D1-203ENST00000563798 KLRF2D3W0D1 207 aa20.06■□□□□ 0.8
VPS9D1-203ENST00000563798 SGSM2O43147 1006 aa20.06■□□□□ 0.8
VPS9D1-203ENST00000563798 HSD17B4P51659 736 aa20.06■□□□□ 0.8
VPS9D1-203ENST00000563798 SAMD3Q8N6K7 520 aa20.06■□□□□ 0.8
VPS9D1-203ENST00000563798 AMNQ9BXJ7 453 aa20.06■□□□□ 0.8
VPS9D1-203ENST00000563798 UMODL1Q5DID0 1318 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 SCN10AQ9Y5Y9 1956 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 OPLAHO14841 1288 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 ZBTB5O15062 677 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 ARIH2O95376 493 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 MYL3P08590 195 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 DNAJB2P25686 324 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 PTPN11Q06124 597 aaPredicted RBP20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 STXBP2Q15833 593 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 NFRKBQ6P4R8 1299 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 COPS5Q92905 334 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 MAP4K1Q92918 833 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 RMDN3Q96TC7 470 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 WNT8AQ9H1J5 351 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 VAT1LQ9HCJ6 419 aa20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 GPHNQ9NQX3 736 aaPredicted RBP20.05■□□□□ 0.8
VPS9D1-203ENST00000563798 A0A0C4DFX4 3053 aa20.04■□□□□ 0.8
VPS9D1-203ENST00000563798 DHX16O60231 1041 aaKnown RBP20.04■□□□□ 0.8
VPS9D1-203ENST00000563798 FGBP02675 491 aa20.04■□□□□ 0.8
VPS9D1-203ENST00000563798 ACRP10323 421 aa20.04■□□□□ 0.8
VPS9D1-203ENST00000563798 GRM4Q14833 912 aa20.04■□□□□ 0.8
VPS9D1-203ENST00000563798 RIOX1Q9H6W3 641 aa20.04■□□□□ 0.8
VPS9D1-203ENST00000563798 E7EWF7 191 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 DLL1O00548 723 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 PPP1R11O60927 126 aaPredicted RBP20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 EIF3JO75822 258 aaKnown RBP20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 TROAPQ12815 778 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 TRAF1Q13077 416 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 SLC35G1Q2M3R5 365 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 NBPF20Q3BBV1 942 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 RPUSD2Q8IZ73 545 aaKnown RBP20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 NCOA7Q8NI08 942 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 VWCEQ96DN2 955 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 MTIF3Q9H2K0 278 aaKnown RBP20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 PXMP2Q9NR77 195 aa20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 TRMT13Q9NUP7 481 aaKnown RBP20.03■□□□□ 0.8
VPS9D1-203ENST00000563798 IFIT3O14879 490 aaKnown RBP20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 GH1P01241 217 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 NR3C2P08235 984 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 IRX6P78412 446 aaPredicted RBP20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 ARHGAP1Q07960 439 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 STOX1Q6ZVD7 989 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 MYLIPQ8WY64 445 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 EMID1Q96A84 441 aaPredicted RBP20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 PBX4Q9BYU1 374 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 TAF6LQ9Y6J9 622 aa20.02■□□□□ 0.8
VPS9D1-203ENST00000563798 ERICH2A1L162 156 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 CFBP00751 764 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 PFKMP08237 780 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 CCL23P55773 120 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 SART3Q15020 963 aaKnown RBP20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 ARHGEF16Q5VV41 709 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 SEPT14Q6ZU15 432 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 RALYLQ86SE5 291 aaKnown RBP20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 SESTD1Q86VW0 696 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 IGDCC4Q8TDY8 1250 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 TIFAQ96CG3 184 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 MTA3Q9BTC8 594 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 ZNF576Q9H609 170 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 SENP2Q9HC62 589 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 CXXC1Q9P0U4 656 aaPredicted RBP20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 DDX41Q9UJV9 622 aaKnown RBP20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 PCDHA1Q9Y5I3 950 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 MYH6P13533 1939 aa20.01■□□□□ 0.79
VPS9D1-203ENST00000563798 CDH23Q9H251 3354 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 PITPNM1O00562 1244 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 MMP3P08254 477 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 GRIN2CQ14957 1233 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 WTAPQ15007 396 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 LY6KQ17RY6 165 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 PHF6Q8IWS0 365 aaKnown RBP eCLIP20■□□□□ 0.79
VPS9D1-203ENST00000563798 MB21D2Q8IYB1 491 aaPredicted RBP20■□□□□ 0.79
VPS9D1-203ENST00000563798 MAFAQ8NHW3 353 aaPredicted RBP20■□□□□ 0.79
VPS9D1-203ENST00000563798 AFG1LQ8WV93 481 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 MAP3K14Q99558 947 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 PDCD2LQ9BRP1 358 aa20■□□□□ 0.79
VPS9D1-203ENST00000563798 GRXCR1A8MXD5 290 aa19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 CYTH3O43739 400 aa19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 CYP2C9P11712 490 aa19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 EIF2AK2P19525 551 aaKnown RBP19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 ANTXR2P58335 489 aa19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 RAB30Q15771 203 aa19.99■□□□□ 0.79
VPS9D1-203ENST00000563798 VSIG10LQ86VR7 867 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms