RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 SCUBE1Q8IWY4 988 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 PMFBP1Q8TBY8 1022 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 DCAF4Q8WV16 495 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 OSBP2Q969R2 916 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 TIMM13Q9Y5L4 95 aaPredicted RBP5.07□□□□□ -1.6
VPS35-203ENST00000562420 A0A1W2PQJ5 194 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 H7BY64 318 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 SLC6A11P48066 632 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 SUMO1P63165 101 aaKnown RBP5.06□□□□□ -1.6
VPS35-203ENST00000562420 KIR3DS1Q14943 382 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 SF1Q15637 639 aaKnown RBP5.06□□□□□ -1.6
VPS35-203ENST00000562420 MROH9Q5TGP6 573 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 WWC2Q6AWC2 1192 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 DENND5AQ6IQ26 1287 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 STYK1Q6J9G0 422 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 SPOCD1Q6ZMY3 1216 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 THAP3Q8WTV1 239 aaPredicted RBP5.06□□□□□ -1.6
VPS35-203ENST00000562420 SLC38A3Q99624 504 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 LNPKQ9C0E8 428 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 KLHL14Q9P2G3 628 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 NUDT5Q9UKK9 219 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 CDK11AQ9UQ88 783 aaPredicted RBP5.06□□□□□ -1.6
VPS35-203ENST00000562420 X6R8D5 127 aa5.06□□□□□ -1.6
VPS35-203ENST00000562420 KDM2BQ8NHM5 1336 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 MYOCOSA0A1B0GUC4 107 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 CCDC85CA6NKD9 419 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 ARNTLO00327 626 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 PRODHO43272 600 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 DIAPH1O60610 1272 aaKnown RBP5.05□□□□□ -1.6
VPS35-203ENST00000562420 SLC9A5Q14940 896 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 INF2Q27J81 1249 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 PRSS53Q2L4Q9 553 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 PLEKHN1Q494U1 663 aaPredicted RBP5.05□□□□□ -1.6
VPS35-203ENST00000562420 C2orf27AQ580R0 203 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 BICRALQ6AI39 1079 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 RPTNQ6XPR3 784 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 MAMDC2Q7Z304 686 aaPredicted RBP5.05□□□□□ -1.6
VPS35-203ENST00000562420 DCP2Q8IU60 420 aaKnown RBP5.05□□□□□ -1.6
VPS35-203ENST00000562420 SIRT2Q8IXJ6 389 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 RCBTB1Q8NDN9 531 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 ZSWIM2Q8NEG5 633 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS35-203ENST00000562420 PLEKHO2Q8TD55 490 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 DPF3Q92784 378 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 TSPAN17Q96FV3 270 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 PEX11GQ96HA9 241 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 DIRC2Q96SL1 478 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 MCOLN1Q9GZU1 580 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 GULP1Q9UBP9 304 aa5.05□□□□□ -1.6
VPS35-203ENST00000562420 TMEFF2Q9UIK5 374 aaPredicted RBP5.05□□□□□ -1.6
VPS35-203ENST00000562420 TRBV23-1A0A0A0MS06 115 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 ZBTB7AO95365 584 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 NAT1P18440 290 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 GALK1P51570 392 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 LSAMPQ13449 338 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 RAB3GAP1Q15042 981 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 PKN1Q16512 942 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 KRTAP5-3Q6L8H2 238 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 ZC3H14Q6PJT7 736 aaKnown RBP5.04□□□□□ -1.6
VPS35-203ENST00000562420 ZNF605Q86T29 641 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 NLRP10Q86W26 655 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 KISS1RQ969F8 398 aaPredicted RBP5.04□□□□□ -1.6
VPS35-203ENST00000562420 MRFAP1L1Q96HT8 127 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 IPO9Q96P70 1041 aaKnown RBP5.04□□□□□ -1.6
VPS35-203ENST00000562420 DNAJC7Q99615 494 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 PFDN2Q9UHV9 154 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 RWDD3Q9Y3V2 267 aa5.04□□□□□ -1.6
VPS35-203ENST00000562420 NISCHQ9Y2I1 1504 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 IRS2Q9Y4H2 1338 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 PPP1R11O60927 126 aaPredicted RBP5.03□□□□□ -1.6
VPS35-203ENST00000562420 KRT1P04264 644 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 FAM153BP0C7A2 387 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 VIPR1P32241 457 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 GPR85P60893 370 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 GABREP78334 506 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 CHRNA2Q15822 529 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 NTRK3Q16288 839 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 KIZQ2M2Z5 673 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 CCDC144BQ3MJ40 725 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 YOD1Q5VVQ6 348 aaPredicted RBP5.03□□□□□ -1.6
VPS35-203ENST00000562420 CYP4F22Q6NT55 531 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 SYDE1Q6ZW31 735 aaPredicted RBP5.03□□□□□ -1.6
VPS35-203ENST00000562420 SEC14L1Q92503 715 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 PTPRN2Q92932 1015 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 EXOC2Q96KP1 924 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 CDC6Q99741 560 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 DHRS4Q9BTZ2 278 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 PHF20Q9BVI0 1012 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 RNF38Q9H0F5 515 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 GCM1Q9NP62 436 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 CD320Q9NPF0 282 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 MARCH2Q9P0N8 246 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 FBLN5Q9UBX5 448 aa5.03□□□□□ -1.6
VPS35-203ENST00000562420 MBD1Q9UIS9 605 aaPredicted RBP5.03□□□□□ -1.6
VPS35-203ENST00000562420 NUDT19A8MXV4 375 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 C22orf46C9J442 243 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 NFIBO00712 420 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 AQP7O14520 342 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 WNT9AO14904 365 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 KCNQ2O43526 872 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms