RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PAPD7Q5XG87 772 aaKnown RBP12.58□□□□□ -0.4
CUX1-218ENST00000560541 TGFBRAP1Q8WUH2 860 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 GPR101Q96P66 508 aaPredicted RBP12.58□□□□□ -0.4
CUX1-218ENST00000560541 FLT1P17948 1338 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 EPHB6O15197 1021 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 SKAP2O75563 359 aaPredicted RBP12.58□□□□□ -0.4
CUX1-218ENST00000560541 CXCR5P32302 372 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 GRM4Q14833 912 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 EZH2Q15910 746 aaKnown RBP12.58□□□□□ -0.4
CUX1-218ENST00000560541 MEA1Q16626 185 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 C12orf60Q5U649 245 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 MAPKAPK5Q8IW41 473 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 RABEP2Q9H5N1 569 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 MLXIPQ9HAP2 919 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 BARHL2Q9NY43 387 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 SRP68Q9UHB9 627 aaKnown RBP12.58□□□□□ -0.4
CUX1-218ENST00000560541 DLEC1Q9Y238 1755 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 SBK1Q52WX2 424 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 MIIPQ5JXC2 388 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 C2CD5Q86YS7 1000 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 LINC00116Q8NCU8 138 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 CCDC42Q96M95 316 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 TMEM47Q9BQJ4 181 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 CCSER1Q9C0I3 900 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 ACBD3Q9H3P7 528 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 HPCAL4Q9UM19 191 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 CAPN6Q9Y6Q1 641 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 CCNE1P24864 410 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 ZBED6P86452 979 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 KIF5AQ12840 1032 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 KCNV1Q6PIU1 500 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 DYMQ7RTS9 669 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 DGKHQ86XP1 1220 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 EFCAB13Q8IY85 973 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 ZNF444Q8N0Y2 327 aaPredicted RBP12.57□□□□□ -0.4
CUX1-218ENST00000560541 ANKRD13CQ8N6S4 541 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 DHTKD1Q96HY7 919 aaPredicted RBP12.57□□□□□ -0.4
CUX1-218ENST00000560541 SH3GLB2Q9NR46 395 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 EHD2Q9NZN4 543 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 KLRF2D3W0D1 207 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 OR52Z1P0C646 297 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 GGCXP38435 758 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 C11orf91Q3C1V1 193 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 USP17L2Q6R6M4 530 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 KIAA0895Q8NCT3 520 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 HDAC7Q8WUI4 952 aa12.57□□□□□ -0.4
CUX1-218ENST00000560541 GOLGB1Q14789 3259 aaKnown RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 EME2A4GXA9 379 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 NUTM2BA6NNL0 878 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 NUTM2EB1AL46 878 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 AP1G2O75843 785 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 ELF1P32519 619 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 TXKP42681 527 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 PSMD2Q13200 908 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 EHBP1Q8NDI1 1231 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 COG1Q8WTW3 980 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 SELENOOQ9BVL4 669 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 SEMA6BQ9H3T3 888 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 BIN2Q9UBW5 565 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 SCN7AQ01118 1682 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 A0A087WUV0 522 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 SMCO2A6NFE2 343 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 MOCS3O95396 460 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 TUBBP07437 444 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 CCNHP51946 323 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 CKAP4Q07065 602 aaKnown RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 SPA17Q15506 151 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 ZKSCAN8Q15776 578 aaPredicted RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 LRRC31Q6UY01 552 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 POTEDQ86YR6 584 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 ITFG2Q969R8 447 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 NLRP3Q96P20 1036 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 CRACR2AQ9BSW2 395 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 MMRN2Q9H8L6 949 aa12.56□□□□□ -0.4
CUX1-218ENST00000560541 CPSF2Q9P2I0 782 aaKnown RBP12.56□□□□□ -0.4
CUX1-218ENST00000560541 KIF3CO14782 793 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 DNA2P51530 1060 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 SLC7A5Q01650 507 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 AFAP1L1Q8TED9 768 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 CCDC47Q96A33 483 aaKnown RBP12.55□□□□□ -0.4
CUX1-218ENST00000560541 UIMC1Q96RL1 719 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 IFIH1Q9BYX4 1025 aaKnown RBP12.55□□□□□ -0.4
CUX1-218ENST00000560541 TMEM260Q9NX78 707 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 BICDL2A1A5D9 508 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 LDHBP07195 334 aaKnown RBP12.55□□□□□ -0.4
CUX1-218ENST00000560541 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 CCDC155Q8N6L0 562 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 OTUD6BQ8N6M0 293 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 TBCKQ8TEA7 893 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 TBC1D22AQ8WUA7 517 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 NUP58Q9BVL2 599 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 UBA5Q9GZZ9 404 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 ARHGAP20Q9P2F6 1191 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 ANKIB1Q9P2G1 1089 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 NCK2O43639 380 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 GNAQP50148 359 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 VAV2P52735 878 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 NONOQ15233 471 aaKnown RBP eCLIP12.55□□□□□ -0.41e-6■■■□□ 15.2
CUX1-218ENST00000560541 AP1ARQ63HQ0 302 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 NFRKBQ6P4R8 1299 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms