RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 PALM3A6NDB9 673 aaPredicted RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 EIF3JO75822 258 aaKnown RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 DDAH1O94760 285 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 CD4P01730 458 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 PFKMP08237 780 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 GNAQP50148 359 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 GHRHRQ02643 423 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 PTPN11Q06124 597 aaPredicted RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 C9orf50Q5SZB4 431 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 CYB5R4Q7L1T6 521 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 RPUSD2Q8IZ73 545 aaKnown RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 CTCFLQ8NI51 663 aaPredicted RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 PURBQ96QR8 312 aaKnown RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 PCDHA1Q9Y5I3 950 aa16.34■□□□□ 0.21
TPM1-223ENST00000560445 RBM8AQ9Y5S9 174 aaKnown RBP16.34■□□□□ 0.21
TPM1-223ENST00000560445 A6NJR5 290 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 CFBP00751 764 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 GH1P01241 217 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 MYL3P08590 195 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 CALM1P0DP23 149 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 CALM2P0DP24 149 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 CALM3P0DP25 149 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 MCM5P33992 734 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 HSD17B4P51659 736 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 PURAQ00577 322 aaKnown RBP16.33■□□□□ 0.2
TPM1-223ENST00000560445 PTH1RQ03431 593 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 BMP2KLQ5H9B9 411 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 NFRKBQ6P4R8 1299 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 PPP4R3CPQ6ZMV5 832 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 CCDC155Q8N6L0 562 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 TMEM87BQ96K49 555 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 IL25Q9H293 177 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 CPVLQ9H3G5 476 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 MAD2L2Q9UI95 211 aa16.33■□□□□ 0.2
TPM1-223ENST00000560445 PNMA6FA0A0J9YX94 578 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 GCOM1H8Y6P7 765 aaPredicted RBP16.32■□□□□ 0.2
TPM1-223ENST00000560445 POLR2MP0CAP2 368 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 SMARCA1P28370 1054 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 MTMR8Q96EF0 704 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 KATNAL1Q9BW62 490 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 PPP1R12CQ9BZL4 782 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 ALDH8A1Q9H2A2 487 aaPredicted RBP16.32■□□□□ 0.2
TPM1-223ENST00000560445 IL23AQ9NPF7 189 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 SEC63Q9UGP8 760 aaKnown RBP16.32■□□□□ 0.2
TPM1-223ENST00000560445 NOD1Q9Y239 953 aa16.32■□□□□ 0.2
TPM1-223ENST00000560445 CASTP20810 708 aaKnown RBP16.31■□□□□ 0.2
TPM1-223ENST00000560445 ITGB8P26012 769 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 IRX5P78411 483 aaPredicted RBP16.31■□□□□ 0.2
TPM1-223ENST00000560445 NFXL1Q6ZNB6 911 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 Q7L0L9 218 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 HOMER1Q86YM7 354 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 STAG2Q8N3U4 1231 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 SLC17A8Q8NDX2 589 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 RIOX1Q9H6W3 641 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 PXMP2Q9NR77 195 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 MRVI1Q9Y6F6 885 aa16.31■□□□□ 0.2
TPM1-223ENST00000560445 KIAA1217Q5T5P2 1943 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 CCDC69A6NI79 296 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 STAM2O75886 525 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 NR3C2P08235 984 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 CSF2RAP15509 400 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 EIF2AK2P19525 551 aaKnown RBP16.3■□□□□ 0.2
TPM1-223ENST00000560445 RFC2P35250 354 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 TROAPQ12815 778 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 BFSP2Q13515 415 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 LAMC2Q13753 1193 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 DGKDQ16760 1214 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 GNPTABQ3T906 1256 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 FAM47CQ5HY64 1035 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 SEPT14Q6ZU15 432 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 MB21D2Q8IYB1 491 aaPredicted RBP16.3■□□□□ 0.2
TPM1-223ENST00000560445 CUL5Q93034 780 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 EMID1Q96A84 441 aaPredicted RBP16.3■□□□□ 0.2
TPM1-223ENST00000560445 RRP36Q96EU6 259 aaKnown RBP16.3■□□□□ 0.2
TPM1-223ENST00000560445 TAAR1Q96RJ0 339 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 ESYT1Q9BSJ8 1104 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 NOC4LQ9BVI4 516 aaKnown RBP16.3■□□□□ 0.2
TPM1-223ENST00000560445 SPZ1Q9BXG8 430 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 ANO2Q9NQ90 1003 aa16.3■□□□□ 0.2
TPM1-223ENST00000560445 DDX49Q9Y6V7 483 aaKnown RBP16.3■□□□□ 0.2
TPM1-223ENST00000560445 SCN10AQ9Y5Y9 1956 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 B4GALT4O60513 344 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 FGBP02675 491 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 TGFB3P10600 412 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 ACTN1P12814 892 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 CCND2P30279 289 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 PSMC6P62333 389 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 RAB30Q15771 203 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 CCDC62Q6P9F0 684 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 SYNE3Q6ZMZ3 975 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 STOX1Q6ZVD7 989 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 RETREG2Q8NC44 543 aa16.29■□□□□ 0.2
TPM1-223ENST00000560445 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.29■□□□□ 0.28e-7■■■□□ 15.2
TPM1-223ENST00000560445 PITPNM1O00562 1244 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 PRC1O43663 620 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 PARNO95453 639 aaKnown RBP16.28■□□□□ 0.2
TPM1-223ENST00000560445 MMP3P08254 477 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 CYP2C18P33260 490 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 EPHB4P54760 987 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 337.6 ms