RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GPKOWQ92917 476 aaPredicted RBP eCLIP14.96□□□□□ -0.01
NEDD8-208ENST00000560427 GTF3C6Q969F1 213 aa14.96□□□□□ -0.01
NEDD8-208ENST00000560427 LARP6Q9BRS8 491 aaKnown RBP14.96□□□□□ -0.01
NEDD8-208ENST00000560427 SLC26A6Q9BXS9 759 aa14.96□□□□□ -0.01
NEDD8-208ENST00000560427 PSTPIP2Q9H939 334 aa14.96□□□□□ -0.01
NEDD8-208ENST00000560427 BAZ2BQ9UIF8 2168 aaKnown RBP14.96□□□□□ -0.01
NEDD8-208ENST00000560427 ZHX1Q9UKY1 873 aaPredicted RBP14.96□□□□□ -0.01
NEDD8-208ENST00000560427 OGDHLQ9ULD0 1010 aa14.96□□□□□ -0.01
NEDD8-208ENST00000560427 FAM184BQ9ULE4 1060 aa14.96□□□□□ -0.01
NEDD8-208ENST00000560427 STXBP3O00186 592 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 RARBP10826 455 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 MCM2P49736 904 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 RGS19P49795 217 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 ADCY7P51828 1080 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 PKN1Q16512 942 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 MCTP2Q6DN12 878 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 PHKBQ93100 1093 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 SHISA4Q96DD7 197 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 ZSCAN31Q96LW9 406 aaPredicted RBP14.95□□□□□ -0.02
NEDD8-208ENST00000560427 PURBQ96QR8 312 aaKnown RBP14.95□□□□□ -0.02
NEDD8-208ENST00000560427 TAAR1Q96RJ0 339 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 RIC8AQ9NPQ8 531 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 SH3GLB2Q9NR46 395 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 PXMP2Q9NR77 195 aa14.95□□□□□ -0.02
NEDD8-208ENST00000560427 SH2B1Q9NRF2 756 aaPredicted RBP14.95□□□□□ -0.02
NEDD8-208ENST00000560427 MEIS2O14770 477 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 STAM2O75886 525 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 TFRCP02786 760 aaKnown RBP14.94□□□□□ -0.02
NEDD8-208ENST00000560427 GNA11P29992 359 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 HOXA13P31271 388 aaPredicted RBP14.94□□□□□ -0.02
NEDD8-208ENST00000560427 STXBP2Q15833 593 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 ME3Q16798 604 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 PRAMEF19Q5SWL8 479 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 XRRA1Q6P2D8 792 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 PDCD2LQ9BRP1 358 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 ZMYND12Q9H0C1 365 aa14.94□□□□□ -0.02
NEDD8-208ENST00000560427 KIAA0100Q14667 2235 aaKnown RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 RBM47A0AV96 593 aaKnown RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 SPDYE3A6NKU9 549 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 DUSP11O75319 330 aaKnown RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 CAPN15O75808 1086 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 EIF3JO75822 258 aaKnown RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 NR3C2P08235 984 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 EIF2AK2P19525 551 aaKnown RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 EN2P19622 333 aaPredicted RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 AP3B2Q13367 1082 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 CCDC144BQ3MJ40 725 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 IQSEC1Q6DN90 963 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 TYW1BQ6NUM6 668 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 FBXO16Q8IX29 292 aaPredicted RBP14.93□□□□□ -0.02
NEDD8-208ENST00000560427 WASF1Q92558 559 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 EHMT1Q9H9B1 1298 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 C6orf50Q9HD87 102 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 Q9Y3F1 56 aa14.93□□□□□ -0.02
NEDD8-208ENST00000560427 CENPFP49454 3210 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 FRMPD3Q5JV73 1810 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 SMCO2A6NFE2 343 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 DNM1LO00429 736 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 NKRFO15226 690 aaKnown RBP eCLIP14.92□□□□□ -0.02
NEDD8-208ENST00000560427 LARGE1O95461 756 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 FOSP01100 380 aaPredicted RBP14.92□□□□□ -0.02
NEDD8-208ENST00000560427 XBP1P17861 261 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 CCND2P30279 289 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 PGM5Q15124 567 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 TAPT1Q6NXT6 567 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 USP17L6PQ6QN14 398 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 NOL8Q76FK4 1167 aaKnown RBP14.92□□□□□ -0.02
NEDD8-208ENST00000560427 VSIG10LQ86VR7 867 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 FCHSD1Q86WN1 690 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 ARRDC4Q8NCT1 418 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 BICD2Q8TD16 824 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 SCFD2Q8WU76 684 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 SPC25Q9HBM1 224 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 XPNPEP3Q9NQH7 507 aa14.92□□□□□ -0.02
NEDD8-208ENST00000560427 FARP2O94887 1054 aaPredicted RBP14.91□□□□□ -0.02
NEDD8-208ENST00000560427 NKX3-2P78367 333 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 TNFAIP2Q03169 654 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 TTLL4Q14679 1199 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 DUSP28Q4G0W2 176 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 GALNT17Q6IS24 598 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 KCNV1Q6PIU1 500 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 UBE2Q1Q7Z7E8 422 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 RNF180Q86T96 592 aa14.91□□□□□ -0.02
NEDD8-208ENST00000560427 LLPHQ9BRT6 129 aaKnown RBP14.91□□□□□ -0.02
NEDD8-208ENST00000560427 UPF3AQ9H1J1 476 aaKnown RBP14.91□□□□□ -0.02
NEDD8-208ENST00000560427 CTDNEP1O95476 244 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 CST5P28325 142 aaPredicted RBP14.9□□□□□ -0.02
NEDD8-208ENST00000560427 ADCYAP1R1P41586 468 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 CLK2P49760 499 aaKnown RBP14.9□□□□□ -0.02
NEDD8-208ENST00000560427 UBE2SQ16763 222 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 GNPTABQ3T906 1256 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 PCNX4Q63HM2 1172 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 EEPD1Q7L9B9 569 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 REXO1Q8N1G1 1221 aaKnown RBP14.9□□□□□ -0.02
NEDD8-208ENST00000560427 NECAB1Q8N987 351 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 NSUN7Q8NE18 718 aaKnown RBP14.9□□□□□ -0.02
NEDD8-208ENST00000560427 PCDHA6Q9UN73 950 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 GNEQ9Y223 722 aaKnown RBP14.9□□□□□ -0.02
NEDD8-208ENST00000560427 PCDHA8Q9Y5H6 950 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 MCM3APO60318 1980 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms