RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 EPHB6O15197 1021 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 ATP8B1O43520 1251 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 PLEKP08567 350 aaPredicted RBP11.21□□□□□ -0.62
LRRC28-216ENST00000559819 IDEP14735 1019 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 ADRA2BP18089 450 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 GYS2P54840 703 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 VSNL1P62760 191 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 AMPD3Q01432 767 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 MEA1Q16626 185 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 WHAMMP3Q1A5X7 153 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 SHROOM1Q2M3G4 852 aaPredicted RBP11.21□□□□□ -0.62
LRRC28-216ENST00000559819 KCTD1Q719H9 257 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 KIAA1328Q86T90 577 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 MSANTD4Q8NCY6 345 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 JAKMIP2Q96AA8 810 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 ABCB6Q9NP58 842 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 USP40Q9NVE5 1235 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 MYO1AQ9UBC5 1043 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 DUSP10Q9Y6W6 482 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 H3BQF6 201 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 SNHG28P0DPA3 235 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 HOXA10P31260 410 aaPredicted RBP11.2□□□□□ -0.62
LRRC28-216ENST00000559819 FXR2P51116 673 aaKnown RBP eCLIP11.2□□□□□ -0.62
LRRC28-216ENST00000559819 BRD3Q15059 726 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 CCDC96Q2M329 555 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 ASPRV1Q53RT3 343 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 CAPZA3Q96KX2 299 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 PLIN4Q96Q06 1357 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 USP17L10C9JJH3 530 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 RAD21O60216 631 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 SHMT1P34896 483 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 ZNF543Q08ER8 600 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 TMEM266Q2M3C6 531 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 BEND6Q5SZJ8 279 aaPredicted RBP11.2□□□□□ -0.62
LRRC28-216ENST00000559819 MEX3CQ5U5Q3 659 aaKnown RBP11.2□□□□□ -0.62
LRRC28-216ENST00000559819 UNC13DQ70J99 1090 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 TRAPPC11Q7Z392 1133 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 KRT26Q7Z3Y9 468 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 FAM114A1Q8IWE2 563 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 RAD54LQ92698 747 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 HAUS4Q9H6D7 363 aa11.2□□□□□ -0.62
LRRC28-216ENST00000559819 FAM196BA6NMK8 535 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 PSMD14O00487 310 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 ZNF263O14978 683 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 TTLL1O95922 423 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 ZBED6P86452 979 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 NFIAQ12857 509 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 CENPPQ6IPU0 288 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 ZSCAN29Q8IWY8 852 aaPredicted RBP11.19□□□□□ -0.62
LRRC28-216ENST00000559819 ZFPM1Q8IX07 1006 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 CRAMP1Q96RY5 1269 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 FAM207AQ9NSI2 230 aaPredicted RBP11.19□□□□□ -0.62
LRRC28-216ENST00000559819 ZNHIT6Q9NWK9 470 aaKnown RBP11.19□□□□□ -0.62
LRRC28-216ENST00000559819 RAB21Q9UL25 225 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 PCDHAC2Q9Y5I4 1007 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 ADAMTSL1Q8N6G6 1762 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 MACROD2A1Z1Q3 448 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 CYLC1P35663 651 aaPredicted RBP11.19□□□□□ -0.62
LRRC28-216ENST00000559819 CACNB3P54284 484 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 SEMA3FQ13275 785 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 TUBB2AQ13885 445 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 FKBP15Q5T1M5 1219 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 CCDC155Q8N6L0 562 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 SMCR8Q8TEV9 937 aaPredicted RBP11.19□□□□□ -0.62
LRRC28-216ENST00000559819 DDX12PQ92771 950 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 HAS1Q92839 578 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 MMS19Q96T76 1030 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 TUBB2BQ9BVA1 445 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 NUP58Q9BVL2 599 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 RIC8AQ9NPQ8 531 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 UBR3Q6ZT12 1888 aa11.19□□□□□ -0.62
LRRC28-216ENST00000559819 PNMA6FA0A0J9YX94 578 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 hCG_1984214I3L0E3 225 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 KRT83P78385 493 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 ORC2Q13416 577 aaPredicted RBP11.18□□□□□ -0.62
LRRC28-216ENST00000559819 VWA3BQ502W6 1294 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 ZNF713Q8N859 430 aaPredicted RBP11.18□□□□□ -0.62
LRRC28-216ENST00000559819 ERGIC2Q96RQ1 377 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 FGFBP2Q9BYJ0 223 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 STK17AQ9UEE5 414 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 DDX25Q9UHL0 483 aaKnown RBP11.18□□□□□ -0.62
LRRC28-216ENST00000559819 SERPINB13Q9UIV8 391 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 MAP2K7O14733 419 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 ZNF185O15231 689 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 SSBP05455 408 aaKnown RBP eCLIP11.18□□□□□ -0.62
LRRC28-216ENST00000559819 CACNB1Q02641 598 aaPredicted RBP11.18□□□□□ -0.62
LRRC28-216ENST00000559819 TMEM119Q4V9L6 283 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 KRT79Q5XKE5 535 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 CDC42EP5Q6NZY7 148 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 SP8Q8IXZ3 490 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 COA1Q9GZY4 146 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 NDST4Q9H3R1 872 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 MMRN2Q9H8L6 949 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 PDE11AQ9HCR9 933 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 KCNQ5Q9NR82 932 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.18□□□□□ -0.62
LRRC28-216ENST00000559819 TBC1D7Q9P0N9 293 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 SIK3Q9Y2K2 1263 aa11.18□□□□□ -0.62
LRRC28-216ENST00000559819 AFF2P51816 1311 aa11.17□□□□□ -0.62
LRRC28-216ENST00000559819 EIF3CLB5ME19 914 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms