RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.19□□□□□ -0.3
SNX1-204ENST00000559061 EDIL3O43854 480 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 RGS20O76081 388 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 GJB1P08034 283 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 GJA8P48165 433 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 CLK2P49760 499 aaKnown RBP13.19□□□□□ -0.3
SNX1-204ENST00000559061 ANO1Q5XXA6 986 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 UBE2Q1Q7Z7E8 422 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 MCF2L2Q86YR7 1114 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 DEFB118Q96PH6 123 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 HMX1Q9NP08 348 aaPredicted RBP13.19□□□□□ -0.3
SNX1-204ENST00000559061 SLC5A4Q9NY91 659 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 LIMCH1Q9UPQ0 1083 aa13.19□□□□□ -0.3
SNX1-204ENST00000559061 STK36Q9NRP7 1315 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 GCOM1H8Y6P7 765 aaPredicted RBP13.18□□□□□ -0.3
SNX1-204ENST00000559061 CTAGE5O15320 804 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 POLR2MP0CAP2 368 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 EIF2AK2P19525 551 aaKnown RBP13.18□□□□□ -0.3
SNX1-204ENST00000559061 ACVR2BQ13705 512 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 PPP1R18Q6NYC8 613 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 DNERQ8NFT8 737 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 U2AF1L4Q8WU68 220 aaKnown RBP13.18□□□□□ -0.3
SNX1-204ENST00000559061 ZFP91Q96JP5 570 aaPredicted RBP13.18□□□□□ -0.3
SNX1-204ENST00000559061 PDCD2LQ9BRP1 358 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 RIC8AQ9NPQ8 531 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 TMEM260Q9NX78 707 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 VPS54Q9P1Q0 977 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 DDX20Q9UHI6 824 aaKnown RBP13.18□□□□□ -0.3
SNX1-204ENST00000559061 NRBP1Q9UHY1 535 aa13.18□□□□□ -0.3
SNX1-204ENST00000559061 RBM47A0AV96 593 aaKnown RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 ESYT2A0FGR8 921 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 MYADML2A6NDP7 307 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 ASB14A6NK59 587 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 M0R2N6 131 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 SEPT4O43236 478 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 ARIH2O95376 493 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 SGPL1O95470 568 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 NAPAP54920 295 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 MRPS9P82933 396 aaKnown RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 PGM5Q15124 567 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 CCDC144BQ3MJ40 725 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 GJC2Q5T442 439 aaPredicted RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 EEPD1Q7L9B9 569 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 FCHSD1Q86WN1 690 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 CCDC83Q8IWF9 413 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 SAMD3Q8N6K7 520 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 SMARCC2Q8TAQ2 1214 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 DIS3LQ8TF46 1054 aaKnown RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 PGBD1Q96JS3 809 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 RMDN3Q96TC7 470 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 ZMYND12Q9H0C1 365 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 PSTPIP2Q9H939 334 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 UPF2Q9HAU5 1272 aaKnown RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 MAP3K20Q9NYL2 800 aaKnown RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 OGDHLQ9ULD0 1010 aa13.17□□□□□ -0.3
SNX1-204ENST00000559061 TNRC18O15417 2968 aaPredicted RBP13.17□□□□□ -0.3
SNX1-204ENST00000559061 LOC102724159A0A0B4J2E5 919 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 hCG_1984214I3L0E3 225 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 ADAMTS4O75173 837 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 CAPN15O75808 1086 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 SMPD1P17405 629 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 ADCYAP1R1P41586 468 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 SSRP1Q08945 709 aaKnown RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 SEMA3FQ13275 785 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 PWP2Q15269 919 aaKnown RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 ZNF713Q8N859 430 aaPredicted RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 RASGRP4Q8TDF6 673 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 NSUN6Q8TEA1 469 aaKnown RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 CRYGNQ8WXF5 182 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 ABHD16BQ9H3Z7 469 aa13.16□□□□□ -0.3
SNX1-204ENST00000559061 ADD3Q9UEY8 706 aaKnown RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 ZHX1Q9UKY1 873 aaPredicted RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 GNEQ9Y223 722 aaKnown RBP13.16□□□□□ -0.3
SNX1-204ENST00000559061 SMCO2A6NFE2 343 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 CPLX1O14810 134 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 DEXIO95424 95 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 NR3C2P08235 984 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 ADCY7P51828 1080 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 TRAF1Q13077 416 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 CCDC62Q6P9F0 684 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 VSIG10LQ86VR7 867 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 TMX3Q96JJ7 454 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 VTA1Q9NP79 307 aa13.15□□□□□ -0.3
SNX1-204ENST00000559061 RBM27Q9P2N5 1060 aaKnown RBP13.15□□□□□ -0.3
SNX1-204ENST00000559061 SYNRGQ9UMZ2 1314 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 AKR1A1P14550 325 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 CNGA1P29973 690 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 RGS19P49795 217 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 NKX3-2P78367 333 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 ARHGEF16Q5VV41 709 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 CCSAPQ6IQ19 270 aaPredicted RBP13.14□□□□□ -0.31
SNX1-204ENST00000559061 COPS5Q92905 334 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 CUL5Q93034 780 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 IWS1Q96ST2 819 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 PHF20Q9BVI0 1012 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 UPF3AQ9H1J1 476 aaKnown RBP13.14□□□□□ -0.31
SNX1-204ENST00000559061 BCAS3Q9H6U6 928 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 ORC3Q9UBD5 711 aaPredicted RBP13.14□□□□□ -0.31
SNX1-204ENST00000559061 PCDHA6Q9UN73 950 aa13.14□□□□□ -0.31
SNX1-204ENST00000559061 KCNJ14Q9UNX9 436 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms