RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 SYNGAP1Q96PV0 1343 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.19□□□□□ -0.62
SPG11-214ENST00000558989 CARNS1A5YM72 827 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 H0YGN5 161 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ADCY6O43306 1168 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 MSCO60682 206 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 PPP1R11O60927 126 aaPredicted RBP11.19□□□□□ -0.62
SPG11-214ENST00000558989 PLEKHA8P1O95397 391 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 CFBP00751 764 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 AKR1A1P14550 325 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 CCDC144BQ3MJ40 725 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ANKLE1Q8NAG6 615 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 TMEM87BQ96K49 555 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 PDGFCQ9NRA1 345 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 SNX14Q9Y5W7 946 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 SLC12A7Q9Y666 1083 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ABCB11O95342 1321 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 WDR19Q8NEZ3 1342 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ASB14A6NK59 587 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 KBTBD13C9JR72 458 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 CYTH3O43739 400 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 REC8O95072 547 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 SYN1P17600 705 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ADCYAP1R1P41586 468 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ALDH5A1P51649 535 aaPredicted RBP11.19□□□□□ -0.62
SPG11-214ENST00000558989 TMEM63BQ5T3F8 832 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 MAMDC4Q6UXC1 1216 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 AMNQ9BXJ7 453 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ABHD16BQ9H3Z7 469 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 FAM184BQ9ULE4 1060 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 ZMYND8Q9ULU4 1186 aaPredicted RBP11.19□□□□□ -0.62
SPG11-214ENST00000558989 PCDHA1Q9Y5I3 950 aa11.19□□□□□ -0.62
SPG11-214ENST00000558989 DOCK5Q9H7D0 1870 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 LOC102724159A0A0B4J2E5 919 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 MYADML2A6NDP7 307 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 ZBTB5O15062 677 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 C6orf222P0C671 652 aaPredicted RBP11.18□□□□□ -0.62
SPG11-214ENST00000558989 HSPA4P34932 840 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 PWP2Q15269 919 aaKnown RBP11.18□□□□□ -0.62
SPG11-214ENST00000558989 LRRC41Q15345 812 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 PRPF38BQ5VTL8 546 aaKnown RBP11.18□□□□□ -0.62
SPG11-214ENST00000558989 DNAJC14Q6Y2X3 702 aaPredicted RBP11.18□□□□□ -0.62
SPG11-214ENST00000558989 DHX32Q7L7V1 743 aaKnown RBP11.18□□□□□ -0.62
SPG11-214ENST00000558989 ARRDC4Q8NCT1 418 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 TAAR1Q96RJ0 339 aa11.18□□□□□ -0.62
SPG11-214ENST00000558989 SYNRGQ9UMZ2 1314 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 DDAH1O94760 285 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 CASTP20810 708 aaKnown RBP11.17□□□□□ -0.62
SPG11-214ENST00000558989 HOXA13P31271 388 aaPredicted RBP11.17□□□□□ -0.62
SPG11-214ENST00000558989 BEX3Q00994 111 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 KRT32Q14532 448 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 SF3A1Q15459 793 aaKnown RBP11.17□□□□□ -0.62
SPG11-214ENST00000558989 LRRC26Q2I0M4 334 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 SYNE3Q6ZMZ3 975 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 Q6ZUG5 572 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 MSL3Q8N5Y2 521 aaKnown RBP11.17□□□□□ -0.62
SPG11-214ENST00000558989 COL20A1Q9P218 1284 aa11.17□□□□□ -0.62
SPG11-214ENST00000558989 ADD3Q9UEY8 706 aaKnown RBP11.17□□□□□ -0.62
SPG11-214ENST00000558989 MRPL11Q9Y3B7 192 aaKnown RBP11.17□□□□□ -0.62
SPG11-214ENST00000558989 KLF18A0A0U1RQI7 1052 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 DNM1LO00429 736 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 MARCH6O60337 910 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 EIF2AK2P19525 551 aaKnown RBP11.16□□□□□ -0.62
SPG11-214ENST00000558989 KIF5BP33176 963 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 EXOSC10Q01780 885 aaKnown RBP11.16□□□□□ -0.62
SPG11-214ENST00000558989 TNFAIP2Q03169 654 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 APOBRQ0VD83 1088 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 BLOC1S2Q6QNY1 142 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 FCHSD1Q86WN1 690 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 TMTC2Q8N394 836 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 SRBD1Q8N5C6 995 aaKnown RBP11.16□□□□□ -0.62
SPG11-214ENST00000558989 KATNBL1Q9H079 304 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 RIOX1Q9H6W3 641 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 ATP11BQ9Y2G3 1177 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 TRIOBPQ9H2D6 2365 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 PPFIA3O75145 1194 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 LIFRP42702 1097 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 RNF180Q86T96 592 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 SYTL5Q8TDW5 730 aaPredicted RBP11.16□□□□□ -0.62
SPG11-214ENST00000558989 BRF1Q92994 677 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 VTI1AQ96AJ9 217 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 RRP36Q96EU6 259 aaKnown RBP11.16□□□□□ -0.62
SPG11-214ENST00000558989 SEC63Q9UGP8 760 aaKnown RBP11.16□□□□□ -0.62
SPG11-214ENST00000558989 NRBP1Q9UHY1 535 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 PNMA2Q9UL42 364 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 NR2E3Q9Y5X4 410 aa11.16□□□□□ -0.62
SPG11-214ENST00000558989 PNMA6FA0A0J9YX94 578 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 OPLAHO14841 1288 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 DYNC1LI2O43237 492 aaPredicted RBP11.15□□□□□ -0.62
SPG11-214ENST00000558989 ZBTB43O43298 467 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 SORBS3O60504 671 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 COL6A1P12109 1028 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 MYCLP12524 364 aaPredicted RBP11.15□□□□□ -0.62
SPG11-214ENST00000558989 SMPD1P17405 629 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 KCNA10Q16322 511 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 TSGA10IPQ3SY00 556 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 ARHGEF16Q5VV41 709 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 APOA5Q6Q788 366 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 CHRDL2Q6WN34 429 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 SEPT14Q6ZU15 432 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms