RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PRRC2BQ5JSZ5 2229 aaKnown RBP11.98□□□□□ -0.49
SCFD1-220ENST00000556486 SCN5AQ14524 2016 aa11.98□□□□□ -0.49
SCFD1-220ENST00000556486 ELP1O95163 1332 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 PALM3A6NDB9 673 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 EPOPA6NHQ4 379 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 USP17L12C9JPN9 530 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 USP17L21D6R901 530 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 TLR3O15455 904 aaKnown RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 DUSP11O75319 330 aaKnown RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 CHGBP05060 677 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 CDK8P49336 464 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 RBM25P49756 843 aaKnown RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 GUCA2AQ02747 115 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 ACVR2BQ13705 512 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 ZSCAN25Q6NSZ9 544 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 GIMAP6Q6P9H5 292 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 CXCL17Q6UXB2 119 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 NOL8Q76FK4 1167 aaKnown RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 CPXCR1Q8N123 301 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 HIPK3Q9H422 1215 aa11.97□□□□□ -0.49
SCFD1-220ENST00000556486 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 DIS3Q9Y2L1 958 aaKnown RBP11.97□□□□□ -0.49
SCFD1-220ENST00000556486 MYH7P12883 1935 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 GREB1LQ9C091 1923 aaPredicted RBP11.96□□□□□ -0.49
SCFD1-220ENST00000556486 SYNGAP1Q96PV0 1343 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 CARNS1A5YM72 827 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 CTAGE5O15320 804 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 CD4P01730 458 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 PSMC6P62333 389 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 TMEM31Q5JXX7 168 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 SPRED2Q7Z698 418 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 ALYREFQ86V81 257 aaKnown RBP11.96□□□□□ -0.49
SCFD1-220ENST00000556486 AMOTL1Q8IY63 956 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 PCSK9Q8NBP7 692 aaKnown RBP11.96□□□□□ -0.49
SCFD1-220ENST00000556486 PPP1R13LQ8WUF5 828 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 LRRN4Q8WUT4 740 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 CHMP4CQ96CF2 233 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 LRRCC1Q9C099 1032 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 WNT8AQ9H1J5 351 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 C11orf16Q9NQ32 467 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 HOMER2Q9NSB8 354 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 ARPP21Q9UBL0 812 aaPredicted RBP11.96□□□□□ -0.49
SCFD1-220ENST00000556486 RCAN3Q9UKA8 241 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 SLC4A7Q9Y6M7 1214 aa11.96□□□□□ -0.49
SCFD1-220ENST00000556486 COL4A4P53420 1690 aaPredicted RBP11.96□□□□□ -0.5
SCFD1-220ENST00000556486 ASTN1O14525 1302 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 BHMG1C9JSJ3 638 aaPredicted RBP11.95□□□□□ -0.5
SCFD1-220ENST00000556486 ARHGEF15O94989 841 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 CA3P07451 260 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 CST5P28325 142 aaPredicted RBP11.95□□□□□ -0.5
SCFD1-220ENST00000556486 COPB2P35606 906 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 SBK1Q52WX2 424 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 CTR9Q6PD62 1173 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 ARMCX2Q7L311 632 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 HLA-CQ95604 372 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 FGD4Q96M96 766 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 PUS7LQ9H0K6 701 aaKnown RBP11.95□□□□□ -0.5
SCFD1-220ENST00000556486 UPF3AQ9H1J1 476 aaKnown RBP11.95□□□□□ -0.5
SCFD1-220ENST00000556486 MTIF3Q9H2K0 278 aaKnown RBP11.95□□□□□ -0.5
SCFD1-220ENST00000556486 SPC25Q9HBM1 224 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 RAVER2Q9HCJ3 691 aaKnown RBP11.95□□□□□ -0.5
SCFD1-220ENST00000556486 MTCH2Q9Y6C9 303 aa11.95□□□□□ -0.5
SCFD1-220ENST00000556486 ERC2O15083 957 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 B4GALT4O60513 344 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 ATP2A2P16615 1042 aaKnown RBP11.94□□□□□ -0.5
SCFD1-220ENST00000556486 GJA9P57773 515 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 CNTN2Q02246 1040 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 TTLL4Q14679 1199 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 AAK1Q2M2I8 961 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 TMEM63BQ5T3F8 832 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 MAMDC4Q6UXC1 1216 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 DEFB128Q7Z7B8 93 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 CCDC144CPQ8IYA2 1237 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 ANKRD35Q8N283 1001 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 KBTBD3Q8NAB2 608 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 ARNTL2Q8WYA1 636 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 TSC1Q92574 1164 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 VWCEQ96DN2 955 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 STRBPQ96SI9 672 aaKnown RBP11.94□□□□□ -0.5
SCFD1-220ENST00000556486 SLF1Q9BQI6 1058 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 NOC4LQ9BVI4 516 aaKnown RBP11.94□□□□□ -0.5
SCFD1-220ENST00000556486 TEX13BQ9BXU2 312 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 ECHDC1Q9NTX5 307 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 TFIP11Q9UBB9 837 aaKnown RBP11.94□□□□□ -0.5
SCFD1-220ENST00000556486 SYNPO2Q9UMS6 1093 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 SLC4A4Q9Y6R1 1079 aa11.94□□□□□ -0.5
SCFD1-220ENST00000556486 GRIN2DO15399 1336 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 DNAJC25-GNG10A0A024R161 153 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 TLL1O43897 1013 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 SOX11P35716 441 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 ITGA7Q13683 1181 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 MSL3Q8N5Y2 521 aaKnown RBP11.93□□□□□ -0.5
SCFD1-220ENST00000556486 KIFC2Q96AC6 838 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 CD320Q9NPF0 282 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 NYAP2Q9P242 653 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 PCDHA11Q9Y5I1 949 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 MYH4Q9Y623 1939 aa11.93□□□□□ -0.5
SCFD1-220ENST00000556486 WDFY4Q6ZS81 3184 aa11.92□□□□□ -0.5
SCFD1-220ENST00000556486 GSG1L2A8MUP6 293 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms