RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 MROH7Q68CQ1 1323 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 OPLAHO14841 1288 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 PLEKHA8P1O95397 391 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 RXRAP19793 462 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 COL9A3Q14050 684 aaPredicted RBP23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 TTLL4Q14679 1199 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 RTN1Q16799 776 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 FBXL16Q8N461 479 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 SRBD1Q8N5C6 995 aaKnown RBP23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 TBC1D5Q92609 795 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 CUL5Q93034 780 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 TAAR1Q96RJ0 339 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 SEZ6LQ9BYH1 1024 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 PXMP2Q9NR77 195 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 PDGFCQ9NRA1 345 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 ATP11BQ9Y2G3 1177 aa23.84■■□□□ 1.41
CCDC88C-210ENST00000555995 KLF18A0A0U1RQI7 1052 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 CCDC196A0A1B0GTZ2 297 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 A0A1W2PPC1 479 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 ASGR1P07306 291 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 RPS6KB1P23443 525 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 FSCN1Q16658 493 aaKnown RBP23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 CHRDL2Q6WN34 429 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 TEX2Q8IWB9 1127 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 TCEANC2Q96MN5 208 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 COL20A1Q9P218 1284 aa23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 ZMYND8Q9ULU4 1186 aaPredicted RBP23.83■■□□□ 1.41
CCDC88C-210ENST00000555995 GOLGA8AA7E2F4 631 aa23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 GOLGA8BA8MQT2 603 aa23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 DYNC1LI2O43237 492 aaPredicted RBP23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 CASTP20810 708 aaKnown RBP23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 CPT1AP50416 773 aa23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 PIBF1Q8WXW3 757 aa23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 DDX49Q9Y6V7 483 aaKnown RBP23.82■■□□□ 1.4
CCDC88C-210ENST00000555995 A0A0U1RQG5 324 aaPredicted RBP23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 MYADML2A6NDP7 307 aa23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 hCG_1984214I3L0E3 225 aa23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 EIF3JO75822 258 aaKnown RBP23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 NR3C2P08235 984 aa23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 EIF2AK2P19525 551 aaKnown RBP23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 TRIM60Q495X7 471 aa23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 Q6ZUG5 572 aa23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 ZNF713Q8N859 430 aaPredicted RBP23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 USP26Q9BXU7 913 aa23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 COLQQ9Y215 455 aaPredicted RBP23.81■■□□□ 1.4
CCDC88C-210ENST00000555995 NID2Q14112 1375 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 TXNP10599 105 aaKnown RBP23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 METAP2P50579 478 aaKnown RBP eCLIP23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 KCNV1Q6PIU1 500 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 OR6J1Q8NGC5 347 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 SMARCC2Q8TAQ2 1214 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 VTI1AQ96AJ9 217 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 TOX2Q96NM4 488 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 PDCD2LQ9BRP1 358 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 TM6SF1Q9BZW5 370 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 POLR3EQ9NVU0 708 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 BRPF3Q9ULD4 1205 aa23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 NAP1L2Q9ULW6 460 aaPredicted RBP23.8■■□□□ 1.4
CCDC88C-210ENST00000555995 PIK3CDO00329 1044 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 CTAGE5O15320 804 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 SYN1P17600 705 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 CCND2P30279 289 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 HOXA13P31271 388 aaPredicted RBP23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 HABP4Q5JVS0 413 aaKnown RBP23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 RAB11FIP4Q86YS3 637 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 BRF1Q92994 677 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 LBHD1Q9BQE6 289 aaPredicted RBP23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 AGXT2Q9BYV1 514 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 RBM27Q9P2N5 1060 aaKnown RBP23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 CYP46A1Q9Y6A2 500 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 CNTNAP5Q8WYK1 1306 aa23.79■■□□□ 1.4
CCDC88C-210ENST00000555995 DCDC2CA8MYV0 355 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 KPNA6O60684 536 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 STAM2O75886 525 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 BMP8BP34820 402 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 BEX3Q00994 111 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 PGM5Q15124 567 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 PPP1R18Q6NYC8 613 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 RUFY3Q7L099 469 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 ANKRD33Q7Z3H0 272 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 FRMPD4Q14CM0 1322 aa23.78■■□□□ 1.4
CCDC88C-210ENST00000555995 LTBP2Q14767 1821 aa23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 TLR3O15455 904 aaKnown RBP23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 CLTBP09497 229 aa23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 TLE2Q04725 743 aa23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 FCHSD1Q86WN1 690 aa23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 CMTR1Q8N1G2 835 aaKnown RBP23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 CCDC82Q8N4S0 544 aa23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 GDF15Q99988 308 aa23.77■■□□□ 1.4
CCDC88C-210ENST00000555995 GH1P01241 217 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 MYCLP12524 364 aaPredicted RBP23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 CPA1P15085 419 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 APOBRQ0VD83 1088 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 GNPTABQ3T906 1256 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 XRRA1Q6P2D8 792 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 SEPT14Q6ZU15 432 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 HEATR3Q7Z4Q2 680 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 GLT8D2Q9H1C3 349 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 PRO3102Q9H379 93 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms