RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 NETO2Q8NC67 525 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 SORCS2Q96PQ0 1159 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 C11orf84Q9BUA3 381 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-216ENST00000555550 BACH2Q9BYV9 841 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 C2orf71A6NGG8 1288 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 ZBTB7AO95365 584 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 FUCA1P04066 466 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 NTRK1P04629 796 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 CYP2C8P10632 490 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 SEPHS1P49903 392 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 KIAA2012Q0VF49 1180 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 FGD4Q96M96 766 aa6.51□□□□□ -1.37
SCFD1-216ENST00000555550 WWC2Q6AWC2 1192 aa6.5□□□□□ -1.37
SCFD1-216ENST00000555550 ADAT2Q7Z6V5 191 aaKnown RBP6.5□□□□□ -1.37
SCFD1-216ENST00000555550 TTC9BQ8N6N2 239 aa6.5□□□□□ -1.37
SCFD1-216ENST00000555550 SH3RF3Q8TEJ3 882 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-216ENST00000555550 HAUS7Q99871 368 aa6.5□□□□□ -1.37
SCFD1-216ENST00000555550 SSBP3Q9BWW4 388 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-216ENST00000555550 C7orf72A4D263 438 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 MROH6A6NGR9 719 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 C6P13671 934 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 RPL13P26373 211 aaKnown RBP6.49□□□□□ -1.37
SCFD1-216ENST00000555550 THBS2P35442 1172 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 HMGA2P52926 109 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 GNPTABQ3T906 1256 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 GLB1LQ6UWU2 654 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 CD300LDQ6UXZ3 194 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 LGI4Q8N135 537 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 DVL3Q92997 716 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-216ENST00000555550 RNF34Q969K3 372 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 KRTAP9-8Q9BYQ0 159 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 WHRNQ9P202 907 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 PCDHB10Q9UN67 800 aa6.49□□□□□ -1.37
SCFD1-216ENST00000555550 NPHP3-ACAD11A0A0J9YXS1 232 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 DDX3XO00571 662 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCFD1-216ENST00000555550 PAMP19021 973 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 FANCCQ00597 558 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 LDLRAD1Q5T700 205 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 ZFPM1Q8IX07 1006 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 Q8N1X5 172 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 TXNDC5Q8NBS9 432 aaKnown RBP6.48□□□□□ -1.37
SCFD1-216ENST00000555550 METTL5Q9NRN9 209 aaKnown RBP6.48□□□□□ -1.37
SCFD1-216ENST00000555550 BACE2Q9Y5Z0 518 aa6.48□□□□□ -1.37
SCFD1-216ENST00000555550 OVOL3O00110 214 aa6.47□□□□□ -1.37
SCFD1-216ENST00000555550 ZNF394Q53GI3 561 aa6.47□□□□□ -1.37
SCFD1-216ENST00000555550 HEATR6Q6AI08 1181 aaKnown RBP6.47□□□□□ -1.37
SCFD1-216ENST00000555550 KYQ8NBH2 561 aa6.47□□□□□ -1.37
SCFD1-216ENST00000555550 RBBP8NLQ8NC74 664 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-216ENST00000555550 PLEKHO2Q8TD55 490 aa6.47□□□□□ -1.37
SCFD1-216ENST00000555550 KLHL25Q9H0H3 589 aa6.47□□□□□ -1.37
SCFD1-216ENST00000555550 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCFD1-216ENST00000555550 PCDHGB7Q9Y5F8 929 aa6.47□□□□□ -1.37
SCFD1-216ENST00000555550 NPHS1O60500 1241 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 SLPIP03973 132 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 EPHX1P07099 455 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 AMPD2Q01433 879 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 C9orf131Q5VYM1 1079 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 ETV3LQ6ZN32 361 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 CCDC81Q6ZN84 652 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 FAM124AQ86V42 546 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 DPF3Q92784 378 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 MRIQ9BWK5 157 aa6.46□□□□□ -1.38
SCFD1-216ENST00000555550 CGGBP1Q9UFW8 167 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-216ENST00000555550 SGSM2O43147 1006 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 PPM1BO75688 479 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 GDF5P43026 501 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 CDSNQ15517 529 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 FAM26FQ5R3K3 315 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 MBLAC2Q68D91 279 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 BORAQ6PGQ7 559 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 ARHGEF39Q8N4T4 335 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 MRRFQ96E11 262 aaKnown RBP6.45□□□□□ -1.38
SCFD1-216ENST00000555550 GBP3Q9H0R5 595 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 GPRC5CQ9NQ84 441 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 BTG4Q9NY30 223 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 MARCH2Q9P0N8 246 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 CLEC1BQ9P126 229 aa6.45□□□□□ -1.38
SCFD1-216ENST00000555550 SCAMP3O14828 347 aaKnown RBP6.44□□□□□ -1.38
SCFD1-216ENST00000555550 RECKO95980 971 aa6.44□□□□□ -1.38
SCFD1-216ENST00000555550 TACR2P21452 398 aa6.44□□□□□ -1.38
SCFD1-216ENST00000555550 ICAM4Q14773 271 aa6.44□□□□□ -1.38
SCFD1-216ENST00000555550 PRR31Q5SQ13 230 aa6.44□□□□□ -1.38
SCFD1-216ENST00000555550 TEX2Q8IWB9 1127 aa6.44□□□□□ -1.38
SCFD1-216ENST00000555550 KISS1RQ969F8 398 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-216ENST00000555550 PPP4R1LQ9P1A2 415 aa6.44□□□□□ -1.38
SCFD1-216ENST00000555550 B4GALT3O60512 393 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 VAMP1P23763 118 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 STAT5AP42229 794 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 ITGA1P56199 1179 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 TTLL6Q8N841 843 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 LCORQ96JN0 433 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-216ENST00000555550 CRBNQ96SW2 442 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 SUGT1Q9Y2Z0 365 aa6.43□□□□□ -1.38
SCFD1-216ENST00000555550 AMHP03971 560 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 PLS3P13797 630 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 ACVRL1P37023 503 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 SLC7A5Q01650 507 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 MILR1Q7Z6M3 343 aa6.42□□□□□ -1.38
SCFD1-216ENST00000555550 DCP2Q8IU60 420 aaKnown RBP6.42□□□□□ -1.38
SCFD1-216ENST00000555550 MENTQ9BUN1 341 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms