RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 FOXD4L1Q9NU39 408 aa14.37□□□□□ -0.11
SHMT2-214ENST00000554604 GNEQ9Y223 722 aaKnown RBP14.37□□□□□ -0.11
SHMT2-214ENST00000554604 ELP1O95163 1332 aa14.37□□□□□ -0.11
SHMT2-214ENST00000554604 MROH7Q68CQ1 1323 aa14.37□□□□□ -0.11
SHMT2-214ENST00000554604 MYH7BA7E2Y1 1941 aa14.37□□□□□ -0.11
SHMT2-214ENST00000554604 SLC27A2O14975 620 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 ZBTB5O15062 677 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 PRC1O43663 620 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 CLTBP09497 229 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 DEKP35659 375 aaKnown RBP14.36□□□□□ -0.11
SHMT2-214ENST00000554604 ANTXR2P58335 489 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 TRAF1Q13077 416 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 DUSP28Q4G0W2 176 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 CREB3L3Q68CJ9 461 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 NFXL1Q6ZNB6 911 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 HOMER1Q86YM7 354 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 IGDCC4Q8TDY8 1250 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 Q9Y3F1 56 aa14.36□□□□□ -0.11
SHMT2-214ENST00000554604 A0A0U1RQG5 324 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-214ENST00000554604 CTAGE5O15320 804 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 CFBP00751 764 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 RAG1P15918 1043 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TROAPQ12815 778 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TSGA10IPQ3SY00 556 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 CXCL17Q6UXB2 119 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 ANKRD33Q7Z3H0 272 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 SH3RF1Q7Z6J0 888 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TMTC2Q8N394 836 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 CTCFLQ8NI51 663 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-214ENST00000554604 SYTL5Q8TDW5 730 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-214ENST00000554604 NSUN6Q8TEA1 469 aaKnown RBP14.35□□□□□ -0.11
SHMT2-214ENST00000554604 SCFD2Q8WU76 684 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TBC1D5Q92609 795 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TMEM87BQ96K49 555 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TOX2Q96NM4 488 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 RMDN3Q96TC7 470 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 MTA3Q9BTC8 594 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 UPF3BQ9BZI7 483 aaKnown RBP14.35□□□□□ -0.11
SHMT2-214ENST00000554604 LY9Q9HBG7 655 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 ZSWIM6Q9HCJ5 1215 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TMEM39AQ9NV64 488 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 PCDHA1Q9Y5I3 950 aa14.35□□□□□ -0.11
SHMT2-214ENST00000554604 LAMA2P24043 3122 aaKnown RBP14.35□□□□□ -0.11
SHMT2-214ENST00000554604 TRIM43BA6NCK2 446 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 CCDC69A6NI79 296 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 CABYRO75952 493 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 PTGS1P23219 599 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 EDNRBP24530 442 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 KIF5BP33176 963 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 NKX3-2P78367 333 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 GSE1Q14687 1217 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 PPP2R5BQ15173 497 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 BRDTQ58F21 947 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-214ENST00000554604 TMEM63BQ5T3F8 832 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 ARHGEF16Q5VV41 709 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 ZNF654Q8IZM8 581 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 BADQ92934 168 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 TRIM43Q96BQ3 446 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-214ENST00000554604 MTMR8Q96EF0 704 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 TAAR1Q96RJ0 339 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 PIGSQ96S52 555 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 RIOX1Q9H6W3 641 aa14.34□□□□□ -0.11
SHMT2-214ENST00000554604 GPHNQ9NQX3 736 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-214ENST00000554604 PNMA6FA0A0J9YX94 578 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 RBM47A0AV96 593 aaKnown RBP14.33□□□□□ -0.12
SHMT2-214ENST00000554604 ARVCFO00192 962 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 KIAA0355O15063 1070 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 NKRFO15226 690 aaKnown RBP eCLIP14.33□□□□□ -0.12
SHMT2-214ENST00000554604 TLR3O15455 904 aaKnown RBP14.33□□□□□ -0.12
SHMT2-214ENST00000554604 DDAH1O94760 285 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 PSMA5P28066 241 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 CPT1AP50416 773 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 FAAP100Q0VG06 881 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 TTLL4Q14679 1199 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 STXBP2Q15833 593 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 OR6J1Q8NGC5 347 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 PIBF1Q8WXW3 757 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 IWS1Q96ST2 819 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 MAP3K14Q99558 947 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 MYL10Q9BUA6 226 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 COL20A1Q9P218 1284 aa14.33□□□□□ -0.12
SHMT2-214ENST00000554604 SOX1O00570 391 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 SH2B2O14492 632 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 PPP1R11O60927 126 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 TXNP10599 105 aaKnown RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 EIF2AK2P19525 551 aaKnown RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 CASTP20810 708 aaKnown RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 CDK7P50613 346 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 LRIT3Q3SXY7 679 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 SEPT14Q6ZU15 432 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 LRCH3Q96II8 777 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 JAKMIP1Q96N16 626 aaKnown RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 ALDH8A1Q9H2A2 487 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 POLR3EQ9NVU0 708 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 MAP3K20Q9NYL2 800 aaKnown RBP14.32□□□□□ -0.12
SHMT2-214ENST00000554604 LIMCH1Q9UPQ0 1083 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 CYP46A1Q9Y6A2 500 aa14.32□□□□□ -0.12
SHMT2-214ENST00000554604 OPLAHO14841 1288 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 CYTH3O43739 400 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 MYL3P08590 195 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms