RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 STAT3P40763 770 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 PPP4R3AQ6IN85 833 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 TRIML1Q8N9V2 468 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 CACTINQ8WUQ7 758 aaKnown RBP14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 PNMA5Q96PV4 448 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 GSDMAQ96QA5 445 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 GPRC5DQ9NZD1 345 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 CTNND2Q9UQB3 1225 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 DOCK1Q14185 1865 aa14.36□□□□□ -0.11
VIPAS39-206ENST00000553888 ARHGAP4P98171 946 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 MTMR2Q13614 643 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 KCNK18Q7Z418 384 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 AGBL1Q96MI9 1066 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 CDC25BP30305 580 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 PRR16Q569H4 304 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 TEX2Q8IWB9 1127 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 HPS3Q969F9 1004 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 CCDC34Q96HJ3 373 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 AK8Q96MA6 479 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 KBTBD4Q9NVX7 518 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 GOLGA6L6A8MZA4 724 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 FAM86B1E9PN63 330 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 KLRC4O43908 158 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 MARCH6O60337 910 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 SERPINC1P01008 464 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 FAM86B2P0C5J1 330 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 LMNB1P20700 586 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 FXR2P51116 673 aaKnown RBP eCLIP14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 TPM4P67936 248 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 TMC6Q7Z403 805 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 CRYGNQ8WXF5 182 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 RANBP17Q9H2T7 1088 aaKnown RBP14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 INTS13Q9NVM9 706 aa14.35□□□□□ -0.11
VIPAS39-206ENST00000553888 MCM6Q14566 821 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 KMT5BQ4FZB7 885 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 SNX29Q8TEQ0 813 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 BLOC1S4Q9NUP1 217 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 SYNPO2Q9UMS6 1093 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 SYNRGQ9UMZ2 1314 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 SPDYE3A6NKU9 549 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 YBX3P16989 372 aaKnown RBP eCLIP14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 WRNIP1Q96S55 665 aa14.34□□□□□ -0.11
VIPAS39-206ENST00000553888 ZNF500O60304 480 aaPredicted RBP14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 UBASH3AP57075 661 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 GOLGA8FQ08AF8 430 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 GOLGA8DPQ0D2H9 430 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 SPP2Q13103 211 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 TMEM266Q2M3C6 531 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 CPXCR1Q8N123 301 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 ENOX1Q8TC92 643 aaKnown RBP14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 CHURC1Q8WUH1 139 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 PYM1Q9BRP8 204 aaKnown RBP14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 COL11A1P12107 1806 aaPredicted RBP14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 PRCPP42785 496 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 MMP14P50281 582 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 ORC2Q13416 577 aaPredicted RBP14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 LDHDQ86WU2 507 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 LENG9Q96B70 501 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 WNK4Q96J92 1243 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 TANGO6Q9C0B7 1094 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 SH2D4AQ9H788 454 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 EMILIN3Q9NT22 766 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 DACH1Q9UI36 760 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 PCDHA12Q9UN75 941 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 SSC5DA1L4H1 1573 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 PARP14Q460N5 1801 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 PHIPQ8WWQ0 1821 aa14.33□□□□□ -0.12
VIPAS39-206ENST00000553888 ZNF536O15090 1300 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 TRIM49BA6NDI0 452 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 CTNND1O60716 968 aaKnown RBP14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 ZNF18P17022 549 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 AP3B2Q13367 1082 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 GPC2Q8N158 579 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 CALML4Q96GE6 196 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 HOMER2Q9NSB8 354 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 FEM1BQ9UK73 627 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 DYMQ7RTS9 669 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 TRIM9Q9C026 710 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 KCNMB3Q9NPA1 279 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 RNF181Q9P0P0 153 aa14.32□□□□□ -0.12
VIPAS39-206ENST00000553888 FCER1AP12319 257 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 VCAM1P19320 739 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 SREBF1P36956 1147 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 USP11P51784 963 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 PMS1P54277 932 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 ZNF658Q5TYW1 1059 aaPredicted RBP14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 EEF2KMTQ96G04 330 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 SYT17Q9BSW7 474 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 GLT8D2Q9H1C3 349 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 MYMKA6NI61 221 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 NFIBO00712 420 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 GCFC2P16383 781 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 ASIC1P78348 528 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 ETNPPLQ8TBG4 499 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 HOOK2Q96ED9 719 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 CDK5RAP3Q96JB5 506 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 RAVER2Q9HCJ3 691 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 FLOT1O75955 427 aa14.31□□□□□ -0.12
VIPAS39-206ENST00000553888 ERCC5P28715 1186 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms