RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	NFIB	O00712	420 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	ICAM1	P05362	532 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	MYL3	P08590	195 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	IFIT2	P09913	472 aa	Known RBP	10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	ALAS1	P13196	640 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	SNAP25	P60880	206 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	BFSP2	Q13515	415 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	MBTPS1	Q14703	1052 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	TRIM71	Q2Q1W2	868 aa	Known RBP	10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	CAGE1	Q8TC20	777 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	KAT2B	Q92831	832 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	RAD9A	Q99638	391 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	MKNK2	Q9HBH9	465 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	PRR12	Q9ULL5	1215 aa		10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.81	□□□□□ -0.68
PRKCH-208	ENST00000553846	WDR87	Q6ZQQ6	2873 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	FOXP2	O15409	715 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	ARIH2	O95376	493 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	SELP	P16109	830 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	HTRA4	P83105	476 aa	Predicted RBP	10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	GDF6	Q6KF10	455 aa	Predicted RBP	10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	CNKSR3	Q6P9H4	555 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	SLC30A10	Q6XR72	485 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	FTSJ3	Q8IY81	847 aa	Known RBP	10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	STK11IP	Q8N1F8	1099 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	OR6J1	Q8NGC5	347 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	CHURC1	Q8WUH1	139 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	CLEC4D	Q8WXI8	215 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	COPS5	Q92905	334 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	WNT8B	Q93098	351 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	C17orf80	Q9BSJ5	609 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	RANBP17	Q9H2T7	1088 aa	Known RBP	10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	MTUS1	Q9ULD2	1270 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	NLRC5	Q86WI3	1866 aa		10.8	□□□□□ -0.68
PRKCH-208	ENST00000553846	RALGAPA2	Q2PPJ7	1873 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	MINDY4B	A8MYZ0	360 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846		H3BQ06	376 aa	Predicted RBP	10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	NKRF	O15226	690 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	KPNA6	O60684	536 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	MCC	P23508	829 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	SSTR3	P32745	418 aa	Predicted RBP	10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	SLC1A4	P43007	532 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	KCNJ6	P48051	423 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	BAAT	Q14032	418 aa	Predicted RBP	10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	PUS10	Q3MIT2	529 aa	Known RBP	10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	FAM47C	Q5HY64	1035 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	CCDC62	Q6P9F0	684 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	BTNL9	Q6UXG8	535 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	NSMF	Q6X4W1	530 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	KCTD1	Q719H9	257 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	LRRC8D	Q7L1W4	858 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	RETREG2	Q8NC44	543 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	PRSS33	Q8NF86	280 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	APPBP2	Q92624	585 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	MRPL38	Q96DV4	380 aa	Known RBP	10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	IL17RB	Q9NRM6	502 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	PRKAG3	Q9UGI9	489 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	CCPG1	Q9ULG6	757 aa		10.79	□□□□□ -0.68
PRKCH-208	ENST00000553846	KIAA1217	Q5T5P2	1943 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	DNAH14	Q0VDD8	3507 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846		M0R2C6	588 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	GPAA1	O43292	621 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	RAB11FIP3	O75154	756 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	LINC00271	P0C7V0	271 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	CKB	P12277	381 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	IRS1	P35568	1242 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	LTBR	P36941	435 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	PPP2R5B	Q15173	497 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	PTGIS	Q16647	500 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	RCSD1	Q6JBY9	416 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	ZSCAN25	Q6NSZ9	544 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	ADHFE1	Q8IWW8	467 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	KBTBD3	Q8NAB2	608 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	PANK1	Q8TE04	598 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	PABPC5	Q96DU9	382 aa	Known RBP	10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	UIMC1	Q96RL1	719 aa		10.78	□□□□□ -0.68
PRKCH-208	ENST00000553846	RIF1	Q5UIP0	2472 aa	Known RBP	10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	NMT2	O60551	498 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	PARN	O95453	639 aa	Known RBP	10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	ARHGAP1	Q07960	439 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	HIC1	Q14526	733 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	CTC1	Q2NKJ3	1217 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	FBXO22	Q8NEZ5	403 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	SCFD2	Q8WU76	684 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	ZBTB40	Q9NUA8	1239 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	ADD3	Q9UEY8	706 aa	Known RBP	10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	GTF2IRD1	Q9UHL9	959 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	GVINP1	Q7Z2Y8	2422 aa		10.77	□□□□□ -0.69
PRKCH-208	ENST00000553846	DMXL1	Q9Y485	3027 aa		10.76	□□□□□ -0.69
PRKCH-208	ENST00000553846	PLXNA3	P51805	1871 aa		10.76	□□□□□ -0.69
PRKCH-208	ENST00000553846	HAS3	O00219	553 aa		10.76	□□□□□ -0.69
PRKCH-208	ENST00000553846	EFCAB14	O75071	495 aa		10.76	□□□□□ -0.69
PRKCH-208	ENST00000553846	MMP3	P08254	477 aa		10.76	□□□□□ -0.69
PRKCH-208	ENST00000553846	TSPY3	P0CV98	308 aa		10.76	□□□□□ -0.69
PRKCH-208	ENST00000553846	TSPY8	P0CW00	308 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms