RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 KPNA6O60684 536 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 ALDH1L1O75891 902 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 SRFP11831 508 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 GUCY1A3Q02108 690 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 ZP2Q05996 745 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 TNK2Q07912 1038 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 SEPT7Q16181 437 aaKnown RBP6.86□□□□□ -1.31
SCFD1-209ENST00000553280 CLEC16AQ2KHT3 1053 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 ZCCHC8Q6NZY4 707 aaKnown RBP6.86□□□□□ -1.31
SCFD1-209ENST00000553280 HSPA12BQ96MM6 686 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 FCRL3Q96P31 734 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-209ENST00000553280 GPR62Q9BZJ7 368 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 GPRC5CQ9NQ84 441 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 GPR27Q9NS67 375 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 SLC5A4Q9NY91 659 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 BACE2Q9Y5Z0 518 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 CAPN6Q9Y6Q1 641 aa6.86□□□□□ -1.31
SCFD1-209ENST00000553280 PITPNM2Q9BZ72 1349 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 H3BS24 57 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 STXBP3O00186 592 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 GPR39O43194 453 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 ZEB2O60315 1214 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 CD3EP07766 207 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 BMP8BP34820 402 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 CLCN7P51798 805 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 GPR85P60893 370 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 STAT4Q14765 748 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 CRTC3Q6UUV7 619 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 LHFPL2Q6ZUX7 228 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 PPIL6Q8IXY8 311 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 IFNL3Q8IZI9 196 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 MFSD4AQ8N468 514 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 WNK4Q96J92 1243 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 PHF20Q9BVI0 1012 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 DUSP15Q9H1R2 295 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-209ENST00000553280 TCEAL9Q9UHQ7 104 aa6.85□□□□□ -1.31
SCFD1-209ENST00000553280 CARMIL2Q6F5E8 1435 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 ARVCFO00192 962 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 KATNA1O75449 491 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 VAV1P15498 845 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 BPIP17213 487 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 LTBRP36941 435 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 SCNN1BP51168 640 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 EPHB1P54762 984 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 TTF1Q15361 905 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-209ENST00000553280 PIK3R6Q5UE93 754 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 E4F1Q66K89 784 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-209ENST00000553280 IQCEQ6IPM2 695 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 SLC23A3Q6PIS1 610 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 ATG4DQ86TL0 474 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-209ENST00000553280 DDX53Q86TM3 631 aaKnown RBP6.84□□□□□ -1.31
SCFD1-209ENST00000553280 OR2W6PQ8NHA6 318 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.84□□□□□ -1.312e-17■■■■□ 19.6
SCFD1-209ENST00000553280 TCTN2Q96GX1 697 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 TTC1Q99614 292 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 SLC12A9Q9BXP2 914 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 ASPSCR1Q9BZE9 553 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 IFT22Q9H7X7 185 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 ATP13A1Q9HD20 1204 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 PCDHA8Q9Y5H6 950 aa6.84□□□□□ -1.31
SCFD1-209ENST00000553280 MEFVO15553 781 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-209ENST00000553280 IFNGR1P15260 489 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 SEPHS1P49903 392 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 EEF1DP3Q658K8 133 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 RCSD1Q6JBY9 416 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 ABHD17CQ6PCB6 329 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 MTDHQ86UE4 582 aaKnown RBP6.83□□□□□ -1.32
SCFD1-209ENST00000553280 RAVER1Q8IY67 606 aaKnown RBP6.83□□□□□ -1.32
SCFD1-209ENST00000553280 FAM168AQ92567 244 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 USP7Q93009 1102 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 KRTAP9-9Q9BYP9 154 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 KRTAP9-4Q9BYQ2 154 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 PUS7LQ9H0K6 701 aaKnown RBP6.83□□□□□ -1.32
SCFD1-209ENST00000553280 SEMA3GQ9NS98 782 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 GPATCH2Q9NW75 528 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 SAMD15Q9P1V8 674 aa6.83□□□□□ -1.32
SCFD1-209ENST00000553280 TMEFF2Q9UIK5 374 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-209ENST00000553280 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-209ENST00000553280 NEMP1O14524 444 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 ZNF205O95201 554 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 PLS3P13797 630 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 KCNAB2Q13303 367 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 MTMR1Q13613 665 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 NFE2Q16621 373 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-209ENST00000553280 LBX2Q6XYB7 198 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 SPATS2Q86XZ4 545 aaKnown RBP6.82□□□□□ -1.32
SCFD1-209ENST00000553280 CCDC103Q8IW40 242 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 USHBP1Q8N6Y0 703 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 LINC00116Q8NCU8 138 aa6.82□□□□□ -1.32
SCFD1-209ENST00000553280 TRIT1Q9H3H1 467 aaKnown RBP6.82□□□□□ -1.32
SCFD1-209ENST00000553280 CARS2Q9HA77 564 aaKnown RBP6.82□□□□□ -1.32
SCFD1-209ENST00000553280 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.82□□□□□ -1.32
SCFD1-209ENST00000553280 GEMIN8Q9NWZ8 242 aaKnown RBP6.82□□□□□ -1.32
SCFD1-209ENST00000553280 CBX4O00257 560 aa6.81□□□□□ -1.32
SCFD1-209ENST00000553280 MSCO60682 206 aa6.81□□□□□ -1.32
SCFD1-209ENST00000553280 F2P00734 622 aa6.81□□□□□ -1.32
SCFD1-209ENST00000553280 PAK1Q13153 545 aa6.81□□□□□ -1.32
SCFD1-209ENST00000553280 RTP2Q5QGT7 225 aa6.81□□□□□ -1.32
SCFD1-209ENST00000553280 TSPYL5Q86VY4 417 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-209ENST00000553280 IGSF22Q8N9C0 903 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms