RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MAP2K1Q02750 393 aaPredicted RBP10.93□□□□□ -0.66
LIMA1-211ENST00000552338 BAATQ14032 418 aaPredicted RBP10.93□□□□□ -0.66
LIMA1-211ENST00000552338 GRB14Q14449 540 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 PLS1Q14651 629 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 UBE2SQ16763 222 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 MORN1Q5T089 497 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 PIK3AP1Q6ZUJ8 805 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 NIPA1Q7RTP0 329 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 GPR142Q7Z601 462 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 NEK8Q86SG6 692 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 RASGRP4Q8TDF6 673 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 TBCKQ8TEA7 893 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 EHMT1Q9H9B1 1298 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 EFCC1Q9HA90 598 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 RTEL1Q9NZ71 1219 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 COL20A1Q9P218 1284 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 RCOR1Q9UKL0 485 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 CFAP45Q9UL16 551 aa10.93□□□□□ -0.66
LIMA1-211ENST00000552338 ELP1O95163 1332 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 LAD1O00515 517 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 MAFGO15525 162 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PEX10O60683 326 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 YEATS4O95619 227 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 TAL1P17542 331 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 ARHGAP4P98171 946 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PTPAQ15257 358 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 ZNF792Q3KQV3 632 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 Q4G0T1 1027 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 JAKMIP3Q5VZ66 844 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PCNX4Q63HM2 1172 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 MCTP1Q6DN14 999 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 MAMDC4Q6UXC1 1216 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PAXIP1Q6ZW49 1069 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PLEKHH3Q7Z736 793 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 FERMT3Q86UX7 667 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 VSIG10LQ86VR7 867 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 NCAPG2Q86XI2 1143 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 MSL3Q8N5Y2 521 aaKnown RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 C4orf32Q8N8J7 132 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 TMEM87AQ8NBN3 555 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 LINC00301Q8NCQ3 95 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 NSUN6Q8TEA1 469 aaKnown RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 FGD4Q96M96 766 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 ZNF396Q96N95 335 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 TAAR1Q96RJ0 339 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PDCD2LQ9BRP1 358 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 R3HDMLQ9H3Y0 253 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 PXMP2Q9NR77 195 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 TMEM260Q9NX78 707 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 ADD3Q9UEY8 706 aaKnown RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 CPA4Q9UI42 421 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 GJD2Q9UKL4 321 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 NOL7Q9UMY1 257 aaKnown RBP10.92□□□□□ -0.66
LIMA1-211ENST00000552338 MCM3APO60318 1980 aa10.92□□□□□ -0.66
LIMA1-211ENST00000552338 TBX3O15119 743 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 PPP6R2O75170 966 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 BAG4O95429 457 aaKnown RBP10.91□□□□□ -0.66
LIMA1-211ENST00000552338 GNRH1P01148 92 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 HOXA13P31271 388 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-211ENST00000552338 PRPHP41219 470 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 FOSBP53539 338 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 KRT85P78386 507 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 HTRA3P83110 453 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 LACTBP83111 547 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-211ENST00000552338 GNL2Q13823 731 aaKnown RBP10.91□□□□□ -0.66
LIMA1-211ENST00000552338 KCTD2Q14681 263 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 SLC39A14Q15043 492 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 PGM5Q15124 567 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 INF2Q27J81 1249 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 ARL6IP4Q66PJ3 421 aaKnown RBP10.91□□□□□ -0.66
LIMA1-211ENST00000552338 SLC30A10Q6XR72 485 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 ANKRD35Q8N283 1001 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 JMYQ8N9B5 988 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 USP28Q96RU2 1077 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 MMP19Q99542 508 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 SCAND2PQ9GZW5 306 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-211ENST00000552338 WBP1LQ9NX94 342 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 UBIAD1Q9Y5Z9 338 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 WDR81Q562E7 1941 aa10.91□□□□□ -0.66
LIMA1-211ENST00000552338 ASTN1O14525 1302 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 IGLV3-22A0A075B6J6 115 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 SOWAHBA6NEL2 793 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 FAM205CA6NFA0 338 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 B4DLN1 442 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 POTEB2H3BUK9 544 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 MEIS1O00470 390 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 NR3C2P08235 984 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 XRCC5P13010 732 aaKnown RBP10.9□□□□□ -0.66
LIMA1-211ENST00000552338 ICAM3P32942 547 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 ALDH5A1P51649 535 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-211ENST00000552338 ATP2C1P98194 919 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-211ENST00000552338 SP3Q02447 781 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 DNM1Q05193 864 aaKnown RBP10.9□□□□□ -0.66
LIMA1-211ENST00000552338 TTC38Q5R3I4 469 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 ANO1Q5XXA6 986 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 FAM173BQ6P4H8 233 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 NSMFQ6X4W1 530 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 SOCS4Q8WXH5 440 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 LENG9Q96B70 501 aa10.9□□□□□ -0.66
LIMA1-211ENST00000552338 INPP4AQ96PE3 977 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms