RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 PPFIA2O75334 1257 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 ATE1O95260 518 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 GBP1P32455 592 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 ETFBP38117 255 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 PRR5P85299 388 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 TMEM201Q5SNT2 666 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 LRCH2Q5VUJ6 765 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 LARP1BQ659C4 914 aaKnown RBP3.35□□□□□ -1.87
LIMA1-209ENST00000552008 DPH6Q7L8W6 267 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 DNAJC10Q8IXB1 793 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 CDADC1Q9BWV3 514 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 IKZF4Q9H2S9 585 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 EHMT1Q9H9B1 1298 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 DLL4Q9NR61 685 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 ACTR10Q9NZ32 417 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 PRKAG3Q9UGI9 489 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 PCSK5Q92824 1860 aa3.35□□□□□ -1.87
LIMA1-209ENST00000552008 FAM86C2PA6NEL3 165 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 MROH6A6NGR9 719 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 CCDC85CA6NKD9 419 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 SMAD7O15105 426 aaKnown RBP3.34□□□□□ -1.87
LIMA1-209ENST00000552008 MUSKO15146 869 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 LAMTOR5O43504 91 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 DDAH1O94760 285 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 GUCY2CP25092 1073 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 GIPRP48546 466 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 SELENOPP49908 381 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 RBL2Q08999 1139 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 R3HDM1Q15032 1099 aaKnown RBP3.34□□□□□ -1.87
LIMA1-209ENST00000552008 NFE2L2Q16236 605 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 CSRP2Q16527 193 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 ARSHQ5FYA8 562 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 BICRALQ6AI39 1079 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 NLRC3Q7RTR2 1065 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 SMARCC2Q8TAQ2 1214 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 HNRNPLLQ8WVV9 542 aaKnown RBP3.34□□□□□ -1.87
LIMA1-209ENST00000552008 ALG3Q92685 438 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 ZBTB8AQ96BR9 441 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 MRFAP1L1Q96HT8 127 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 SHDQ96IW2 340 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 TM9SF2Q99805 663 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 ZSWIM4Q9H7M6 989 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 GMIPQ9P107 970 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 PPP4R1LQ9P1A2 415 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 DBR1Q9UK59 544 aaKnown RBP3.34□□□□□ -1.87
LIMA1-209ENST00000552008 SLC12A7Q9Y666 1083 aa3.34□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQJ5 194 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 CHURC1-FNTBB4DL54 471 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 F8W031 263 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-209ENST00000552008 SMARCA5O60264 1052 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-209ENST00000552008 PRAMEF1O95521 474 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 KRTAP10-9P60411 292 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 RNF4P78317 190 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 ABHD18Q0P651 414 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 SURF1Q15526 300 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 FXNQ16595 210 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 FAM26FQ5R3K3 315 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 NBPF6Q5VWK0 638 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 OVOS1Q6IE37 1185 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 RBBP8NLQ8NC74 664 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-209ENST00000552008 DNERQ8NFT8 737 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 ATG4CQ96DT6 458 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 NBPF4Q96M43 638 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 SRPK1Q96SB4 655 aaKnown RBP3.33□□□□□ -1.88
LIMA1-209ENST00000552008 OSBPL2Q9H1P3 480 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 ANTXR1Q9H6X2 564 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 ST7Q9NRC1 585 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 SIRPGQ9P1W8 387 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 TCAF1Q9Y4C2 921 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 PRR36Q9H6K5 1346 aa3.33□□□□□ -1.88
LIMA1-209ENST00000552008 NPEPPSL1A6NEC2 478 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 GPR42O15529 346 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 NME1P15531 152 aaKnown RBP3.32□□□□□ -1.88
LIMA1-209ENST00000552008 PMLP29590 882 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 DPTQ07507 201 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 IFRD2Q12894 506 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-209ENST00000552008 SMAD4Q13485 552 aaKnown RBP3.32□□□□□ -1.88
LIMA1-209ENST00000552008 SNW1Q13573 536 aaKnown RBP3.32□□□□□ -1.88
LIMA1-209ENST00000552008 RAB33AQ14088 237 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 BMS1Q14692 1282 aaKnown RBP3.32□□□□□ -1.88
LIMA1-209ENST00000552008 NBPF9Q3BBW0 867 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 CCDC144BQ3MJ40 725 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 RUFY4Q6ZNE9 571 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 CIR1Q86X95 450 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-209ENST00000552008 TMEM52Q8NDY8 209 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 VOPP1Q96AW1 172 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 DHRS1Q96LJ7 313 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 KIF2CQ99661 725 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 SEMA4AQ9H3S1 761 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 MINPP1Q9UNW1 487 aa3.32□□□□□ -1.88
LIMA1-209ENST00000552008 MEIS3P2A8K0S8 358 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 SIGLEC6O43699 453 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 CLEC3AO75596 197 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 ZNF205O95201 554 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 GNPTABQ3T906 1256 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 INTS3Q68E01 1043 aaKnown RBP3.31□□□□□ -1.88
LIMA1-209ENST00000552008 VHLLQ6RSH7 139 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 UNC5AQ6ZN44 842 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 SCUBE1Q8IWY4 988 aa3.31□□□□□ -1.88
LIMA1-209ENST00000552008 AMER2Q8N7J2 671 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms