RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 FLOT1O75955 427 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 APPP05067 770 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 HSPD1P10809 573 aaKnown RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 USP5P45974 858 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 DYNLL1P63167 89 aaKnown RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 FGD1P98174 961 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 TRDNQ13061 729 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 CERKLQ49MI3 558 aaPredicted RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 KRT40Q6A162 431 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 RUFY3Q7L099 469 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 ZNF589Q86UQ0 364 aaPredicted RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 METTL16Q86W50 562 aaKnown RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 SPICE1Q8N0Z3 855 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 MAGEB6Q8N7X4 407 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 MIGA1Q8NAN2 632 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 SHCBP1Q8NEM2 672 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 HERVK_113Q902F9 699 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 ATG4CQ96DT6 458 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 GLT1D1Q96MS3 346 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 TOX2Q96NM4 488 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 NEK1Q96PY6 1258 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 MROH8Q9H579 483 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 SENP2Q9HC62 589 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 CABP5Q9NP86 173 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 PIH1D3Q9NQM4 214 aaKnown RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 SH2B1Q9NRF2 756 aaPredicted RBP8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 ATAD5Q96QE3 1844 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 ROBO3Q96MS0 1386 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 MROH7Q68CQ1 1323 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 ZNF532Q9HCE3 1301 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 MYH7P12883 1935 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 RLFQ13129 1914 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 A0A0U1RQG5 324 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 MOXD2PA6NHM9 499 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 ZNF213O14771 459 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 C6orf222P0C671 652 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 PDIA4P13667 645 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 CYP7A1P22680 504 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 NUCB2P80303 420 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 KCTD2Q14681 263 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 COG2Q14746 738 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 SEPT2Q15019 361 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 KCNA10Q16322 511 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 PUS10Q3MIT2 529 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 RALYLQ86SE5 291 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 ABRAQ8N0Z2 381 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 OSBP2Q969R2 916 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 INTS4Q96HW7 963 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 SEC62Q99442 399 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 TINF2Q9BSI4 451 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 IL25Q9H293 177 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 ALDH8A1Q9H2A2 487 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 SLKQ9H2G2 1235 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 IL23AQ9NPF7 189 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 NRBP1Q9UHY1 535 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 SERPINB13Q9UIV8 391 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 LIMCH1Q9UPQ0 1083 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 FCF1Q9Y324 198 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 SIPA1L1O43166 1804 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 UMODL1Q5DID0 1318 aa8.29□□□□□ -1.08
DEPDC4-208ENST00000549341 MAGEB6P1A0A0J9YX57 407 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 PATL2C9JE40 543 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 M0R2C6 588 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 TERTO14746 1132 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 TLR3O15455 904 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ZBTB24O43167 697 aaPredicted RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 GPR37L1O60883 481 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 FGBP02675 491 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 CA3P07451 260 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ZNF865P0CJ78 1059 aaPredicted RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ATP2A2P16615 1042 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 PTMSP20962 102 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 CCL23P55773 120 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ALX1Q15699 326 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 TATDN1Q6P1N9 297 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 CLEC10AQ8IUN9 316 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 AMOTL1Q8IY63 956 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 MB21D1Q8N884 522 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ARNTL2Q8WYA1 636 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 TSEN34Q9BSV6 310 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 UPF3BQ9BZI7 483 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 NAPBQ9H115 298 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 HIPK3Q9H422 1215 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 HOXC10Q9NYD6 342 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 MTCH2Q9Y6C9 303 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 SLC4A7Q9Y6M7 1214 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ZNF236Q9UL36 1845 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 TRANK1O15050 2925 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 ZMYM6O95789 1325 aa8.28□□□□□ -1.08
DEPDC4-208ENST00000549341 A0A1W2PRG0 241 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 TCRBV5S4A2TA0A5A2 114 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 EPOPA6NHQ4 379 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 SMIM22K7EJ46 135 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 RAD21O60216 631 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 MBD4O95243 580 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 ASGR1P07306 291 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 SLC3A2P08195 630 aaKnown RBP8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 RPS6KB1P23443 525 aa8.27□□□□□ -1.09
DEPDC4-208ENST00000549341 SSTR3P32745 418 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms