RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 AMPD3Q01432 767 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 MUM1L1Q5H9M0 696 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 CENPPQ6IPU0 288 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 CNNM4Q6P4Q7 775 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 C16orf86Q6ZW13 317 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 KCNK18Q7Z418 384 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 RETREG2Q8NC44 543 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 NEDD1Q8NHV4 660 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 ERGIC2Q96RQ1 377 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 NDST4Q9H3R1 872 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 FAM204AQ9H8W3 233 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 RTCBQ9Y3I0 505 aaKnown RBP17.59■□□□□ 0.41
LDLR-204ENST00000545707 SYF2O95926 243 aaKnown RBP17.59■□□□□ 0.41
LDLR-204ENST00000545707 EIF4A3P38919 411 aaKnown RBP17.59■□□□□ 0.41
LDLR-204ENST00000545707 MATR3P43243 847 aaKnown RBP eCLIP17.59■□□□□ 0.41
LDLR-204ENST00000545707 VAV2P52735 878 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 GPSM2P81274 684 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 SPA17Q15506 151 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 CALCRLQ16602 461 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 VWA3BQ502W6 1294 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 ZNF804AQ7Z570 1209 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 COG1Q8WTW3 980 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 HDAC7Q8WUI4 952 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 MAGEF1Q9HAY2 307 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 EHD2Q9NZN4 543 aa17.59■□□□□ 0.41
LDLR-204ENST00000545707 CCDC88AQ3V6T2 1871 aa17.58■□□□□ 0.41
LDLR-204ENST00000545707 GRAPQ13588 217 aa17.58■□□□□ 0.41
LDLR-204ENST00000545707 LRRC47Q8N1G4 583 aaKnown RBP17.58■□□□□ 0.41
LDLR-204ENST00000545707 GOLGA5Q8TBA6 731 aa17.58■□□□□ 0.41
LDLR-204ENST00000545707 GRAPLQ8TC17 118 aaPredicted RBP17.58■□□□□ 0.41
LDLR-204ENST00000545707 FAM71BQ8TC56 605 aa17.58■□□□□ 0.41
LDLR-204ENST00000545707 IFIH1Q9BYX4 1025 aaKnown RBP17.58■□□□□ 0.41
LDLR-204ENST00000545707 SIK3Q9Y2K2 1263 aa17.58■□□□□ 0.41
LDLR-204ENST00000545707 LEMD3Q9Y2U8 911 aa17.58■□□□□ 0.41
LDLR-204ENST00000545707 RNF40O75150 1001 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 LDHCP07864 332 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 RRAGAQ7L523 313 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 EHBP1Q8NDI1 1231 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 MTMR9Q96QG7 549 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 PURBQ96QR8 312 aaKnown RBP17.58■□□□□ 0.4
LDLR-204ENST00000545707 PLEKHA4Q9H4M7 779 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 CCNL1Q9UK58 526 aaPredicted RBP17.58■□□□□ 0.4
LDLR-204ENST00000545707 HPCAL4Q9UM19 191 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 PLAGL2Q9UPG8 496 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 PCDHA13Q9Y5I0 950 aa17.58■□□□□ 0.4
LDLR-204ENST00000545707 TUBBP07437 444 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 ZNF662Q6ZS27 426 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 MSL3Q8N5Y2 521 aaKnown RBP17.57■□□□□ 0.4
LDLR-204ENST00000545707 LARP4BQ92615 738 aaKnown RBP17.57■□□□□ 0.4
LDLR-204ENST00000545707 CDK5RAP3Q96JB5 506 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 DEF6Q9H4E7 631 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 CD209Q9NNX6 404 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 GPCPD1Q9NPB8 672 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 LRRC53A6NM62 1247 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 NCK2O43639 380 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 UFL1O94874 794 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 KIF11P52732 1056 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 ECM1Q16610 540 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 UBE2SQ16763 222 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 SKIDA1Q1XH10 827 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 CREG2Q8IUH2 290 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 KANSL2Q9H9L4 492 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 SALL4Q9UJQ4 1053 aa17.57■□□□□ 0.4
LDLR-204ENST00000545707 TRIM66O15016 1216 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 CKAP4Q07065 602 aaKnown RBP17.56■□□□□ 0.4
LDLR-204ENST00000545707 PICALMQ13492 652 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 NFRKBQ6P4R8 1299 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 LEKR1Q6ZMV7 388 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 ZNF287Q9HBT7 754 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 GOLGB1Q14789 3259 aaKnown RBP17.56■□□□□ 0.4
LDLR-204ENST00000545707 ZC3H4Q9UPT8 1303 aaKnown RBP17.56■□□□□ 0.4
LDLR-204ENST00000545707 A0A0U1RQG5 324 aaPredicted RBP17.56■□□□□ 0.4
LDLR-204ENST00000545707 A0A1W2PQJ5 194 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 AKR1B10O60218 316 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 GGCXP38435 758 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 TNNI2P48788 182 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 RHBDL3P58872 404 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 SLC7A5Q01650 507 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 CCNI2Q6ZMN8 369 aaPredicted RBP17.56■□□□□ 0.4
LDLR-204ENST00000545707 UNC13DQ70J99 1090 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 SNX29Q8TEQ0 813 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 DDX12PQ92771 950 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 LRRC1Q9BTT6 524 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 TMEM51Q9NW97 253 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 TBC1D7Q9P0N9 293 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 DMGDHQ9UI17 866 aaKnown RBP17.56■□□□□ 0.4
LDLR-204ENST00000545707 SNX12Q9UMY4 172 aa17.56■□□□□ 0.4
LDLR-204ENST00000545707 GPR75-ASB3A0A0A6YYF3 556 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 SLURP2P0DP57 97 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 PDHBP11177 359 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 RFC4P35249 363 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 APBA1Q02410 837 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 FIGNQ5HY92 759 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 MFSD14BQ5SR56 506 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 RC3H1Q5TC82 1133 aaKnown RBP17.55■□□□□ 0.4
LDLR-204ENST00000545707 SELENOOQ9BVL4 669 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 TANGO6Q9C0B7 1094 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 SH2D4AQ9H788 454 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 ANO9A1A5B4 782 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 GFPT1Q06210 699 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms