RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 HOXA13P31271 388 aaPredicted RBP18.17■□□□□ 0.5
CCDC78-216ENST00000544996 RCAN1P53805 252 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 NKX3-2P78367 333 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 SNX17Q15036 470 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 FSCN1Q16658 493 aaKnown RBP18.17■□□□□ 0.5
CCDC78-216ENST00000544996 RTN1Q16799 776 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 C1orf53Q5VUE5 145 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 CCSAPQ6IQ19 270 aaPredicted RBP18.17■□□□□ 0.5
CCDC78-216ENST00000544996 TMTC3Q6ZXV5 915 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 CCDC82Q8N4S0 544 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 VTI1AQ96AJ9 217 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 STARD7Q9NQZ5 370 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 PRKAG2Q9UGJ0 569 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 ZMYND8Q9ULU4 1186 aaPredicted RBP18.17■□□□□ 0.5
CCDC78-216ENST00000544996 ATP11BQ9Y2G3 1177 aa18.17■□□□□ 0.5
CCDC78-216ENST00000544996 ASGR1P07306 291 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 CPA1P15085 419 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 EIF2AK2P19525 551 aaKnown RBP18.16■□□□□ 0.5
CCDC78-216ENST00000544996 CASTP20810 708 aaKnown RBP18.16■□□□□ 0.5
CCDC78-216ENST00000544996 RPS6KB1P23443 525 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 PPP2R5BQ15173 497 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 CHRDL2Q6WN34 429 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 Q6ZUG5 572 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 CUL5Q93034 780 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 PXMP2Q9NR77 195 aa18.16■□□□□ 0.5
CCDC78-216ENST00000544996 COLQQ9Y215 455 aaPredicted RBP18.16■□□□□ 0.5
CCDC78-216ENST00000544996 CCDC196A0A1B0GTZ2 297 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 GOLGA8AA7E2F4 631 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 GOLGA8BA8MQT2 603 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 NKRFO15226 690 aaKnown RBP eCLIP18.15■□□□□ 0.5
CCDC78-216ENST00000544996 NR3C2P08235 984 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 TXNP10599 105 aaKnown RBP18.15■□□□□ 0.5
CCDC78-216ENST00000544996 SYN1P17600 705 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 TTLL4Q14679 1199 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 TRIM60Q495X7 471 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 FCHSD1Q86WN1 690 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 FBXL16Q8N461 479 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 ELP1O95163 1332 aa18.15■□□□□ 0.5
CCDC78-216ENST00000544996 CTAGE5O15320 804 aa18.14■□□□□ 0.49
CCDC78-216ENST00000544996 EIF3JO75822 258 aaKnown RBP18.14■□□□□ 0.49
CCDC78-216ENST00000544996 METAP2P50579 478 aaKnown RBP eCLIP18.14■□□□□ 0.49
CCDC78-216ENST00000544996 IRX5P78411 483 aaPredicted RBP18.14■□□□□ 0.49
CCDC78-216ENST00000544996 BEX3Q00994 111 aa18.14■□□□□ 0.49
CCDC78-216ENST00000544996 BRDTQ58F21 947 aaPredicted RBP18.14■□□□□ 0.49
CCDC78-216ENST00000544996 SEPT14Q6ZU15 432 aa18.14■□□□□ 0.49
CCDC78-216ENST00000544996 BRF1Q92994 677 aa18.14■□□□□ 0.49
CCDC78-216ENST00000544996 CYP46A1Q9Y6A2 500 aa18.14■□□□□ 0.49
CCDC78-216ENST00000544996 MCM3APO60318 1980 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 CABYRO75952 493 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 MYCLP12524 364 aaPredicted RBP18.13■□□□□ 0.49
CCDC78-216ENST00000544996 CPT1AP50416 773 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 APOBRQ0VD83 1088 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 TMEM63BQ5T3F8 832 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 RUFY3Q7L099 469 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 HEATR3Q7Z4Q2 680 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 OR6J1Q8NGC5 347 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 SMARCC2Q8TAQ2 1214 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 LBHD1Q9BQE6 289 aaPredicted RBP18.13■□□□□ 0.49
CCDC78-216ENST00000544996 PDCD2LQ9BRP1 358 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 ZSWIM6Q9HCJ5 1215 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 LCTP09848 1927 aa18.13■□□□□ 0.49
CCDC78-216ENST00000544996 hCG_1642624A0A1W2PR95 340 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 TLE2Q04725 743 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 HABP4Q5JVS0 413 aaKnown RBP18.12■□□□□ 0.49
CCDC78-216ENST00000544996 CXCL17Q6UXB2 119 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 AGXT2Q9BYV1 514 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 TM6SF1Q9BZW5 370 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 PSTPIP2Q9H939 334 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 PRDM5Q9NQX1 630 aaPredicted RBP18.12■□□□□ 0.49
CCDC78-216ENST00000544996 MROH7Q68CQ1 1323 aa18.12■□□□□ 0.49
CCDC78-216ENST00000544996 A0A0U1RQG5 324 aaPredicted RBP18.11■□□□□ 0.49
CCDC78-216ENST00000544996 DCDC2CA8MYV0 355 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 PIK3CDO00329 1044 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 PQBP1O60828 265 aaKnown RBP18.11■□□□□ 0.49
CCDC78-216ENST00000544996 PTGS1P23219 599 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 CCND2P30279 289 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 PGM5Q15124 567 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 KCNV1Q6PIU1 500 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 ANKRD33Q7Z3H0 272 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 VSIG10LQ86VR7 867 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 TOX2Q96NM4 488 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 POLR3EQ9NVU0 708 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 RBM27Q9P2N5 1060 aaKnown RBP18.11■□□□□ 0.49
CCDC78-216ENST00000544996 MRVI1Q9Y6F6 885 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 V9GY48 417 aaPredicted RBP18.11■□□□□ 0.49
CCDC78-216ENST00000544996 LRRC37A2A6NM11 1700 aa18.11■□□□□ 0.49
CCDC78-216ENST00000544996 MYH6P13533 1939 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 CNTNAP5Q8WYK1 1306 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 CLTBP09497 229 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 MAGEA10P43363 369 aaPredicted RBP18.1■□□□□ 0.49
CCDC78-216ENST00000544996 CCDC62Q6P9F0 684 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 USP17L6PQ6QN14 398 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 GDF15Q99988 308 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 SEZ6LQ9BYH1 1024 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 FAM217BQ9NTX9 383 aaPredicted RBP18.1■□□□□ 0.49
CCDC78-216ENST00000544996 ALPK3Q96L96 1907 aa18.1■□□□□ 0.49
CCDC78-216ENST00000544996 hCG_1984214I3L0E3 225 aa18.09■□□□□ 0.49
CCDC78-216ENST00000544996 ARVCFO00192 962 aa18.09■□□□□ 0.49
CCDC78-216ENST00000544996 MEIS2O14770 477 aa18.09■□□□□ 0.49
CCDC78-216ENST00000544996 KPNA6O60684 536 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 154.2 ms