RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	DNER	Q8NFT8	737 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	NPLOC4	Q8TAT6	608 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	IPO9	Q96P70	1041 aa	Known RBP	11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	APBA2	Q99767	749 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	ANO3	Q9BYT9	981 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	ASB14	A6NK59	587 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	PDIA4	P13667	645 aa	Known RBP	11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	ZNF76	P36508	570 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	ALDH5A1	P51649	535 aa	Predicted RBP	11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	NONO	Q15233	471 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	MFSD14C	Q5VZR4	134 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	PIK3AP1	Q6ZUJ8	805 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	USP6NL	Q92738	828 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	MAML3	Q96JK9	1138 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	FOXP1	Q9H334	677 aa	Predicted RBP	11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	PXMP2	Q9NR77	195 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	DIS3	Q9Y2L1	958 aa	Known RBP	11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	CEP350	Q5VT06	3117 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	THSD7B	Q9C0I4	1608 aa		11.6	□□□□□ -0.55
CPSF7-221	ENST00000543545	ADCY3	O60266	1144 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	NR3C2	P08235	984 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	HOXC6	P09630	235 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	XRCC5	P13010	732 aa	Known RBP	11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	ATP2B1	P20020	1258 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	CCND2	P30279	289 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	CLK2	P49760	499 aa	Known RBP	11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	NPY5R	Q15761	445 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	CCL14	Q16627	93 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	EEPD1	Q7L9B9	569 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	CTU1	Q7Z7A3	348 aa	Known RBP	11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	FERMT3	Q86UX7	667 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	TRMT44	Q8IYL2	757 aa	Known RBP	11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	TBCK	Q8TEA7	893 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	ZFP91	Q96JP5	570 aa	Predicted RBP	11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	IWS1	Q96ST2	819 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	CNPY2	Q9Y2B0	182 aa		11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	DDX49	Q9Y6V7	483 aa	Known RBP	11.59	□□□□□ -0.55
CPSF7-221	ENST00000543545	ELN	P15502	786 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	CYP2C19	P33261	490 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	ARHGAP4	P98171	946 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	IRF5	Q13568	498 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	PGM5	Q15124	567 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	STXBP2	Q15833	593 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	INF2	Q27J81	1249 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	OLFML2B	Q68BL8	750 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	ARMCX2	Q7L311	632 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	NOSTRIN	Q8IVI9	506 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	PDCD2L	Q9BRP1	358 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	TINF2	Q9BSI4	451 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	RTEL1	Q9NZ71	1219 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	NOL7	Q9UMY1	257 aa	Known RBP	11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	MTMR6	Q9Y217	621 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	PTPN22	Q9Y2R2	807 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	PTCH2	Q9Y6C5	1203 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	RLF	Q13129	1914 aa		11.58	□□□□□ -0.56
CPSF7-221	ENST00000543545	KIF28P	B7ZC32	967 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545		M0R2N6	131 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	EIF3J	O75822	258 aa	Known RBP	11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	ZSCAN22	P10073	491 aa	Predicted RBP	11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	GRK4	P32298	578 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	SREBF1	P36956	1147 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	LETM2	Q2VYF4	491 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	XRRA1	Q6P2D8	792 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	SEPT14	Q6ZU15	432 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	NEK8	Q86SG6	692 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	NLRX1	Q86UT6	975 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	VSIG10L	Q86VR7	867 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	MSL3	Q8N5Y2	521 aa	Known RBP	11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	IL31RA	Q8NI17	732 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	FGD4	Q96M96	766 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	PRDM10	Q9NQV6	1147 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	FLRT1	Q9NZU1	646 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	ASTN1	O14525	1302 aa		11.57	□□□□□ -0.56
CPSF7-221	ENST00000543545	LOC102724159	A0A0B4J2E5	919 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	FAM205C	A6NFA0	338 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	MARCH6	O60337	910 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	SNAI1	O95863	264 aa	Predicted RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	U2AF2	P26368	475 aa	Known RBP eCLIP	11.56	□□□□□ -0.56	9e-9	■■■□□ 15
CPSF7-221	ENST00000543545	USP11	P51784	963 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	NUCB2	P80303	420 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	PKP1	Q13835	747 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	PWP2	Q15269	919 aa	Known RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	PKN2	Q16513	984 aa	Known RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	EARS2	Q5JPH6	523 aa	Known RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	PRAMEF19	Q5SWL8	479 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	PCNX4	Q63HM2	1172 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	MAMDC4	Q6UXC1	1216 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	FBXO16	Q8IX29	292 aa	Predicted RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	SLAIN1	Q8ND83	568 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	PXYLP1	Q8TE99	480 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	TRIB2	Q92519	343 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	TNFRSF25	Q93038	417 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	RPTOR	Q8N122	1335 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms