RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 V9GYY5 206 aaPredicted RBP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 A0A1W2PRG0 241 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 MYMKA6NI61 221 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 RNF225M0QZC1 329 aaPredicted RBP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 MFAP3LO75121 409 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 PDIA5Q14554 519 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 TTI2Q6NXR4 508 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 LARP4BQ92615 738 aaKnown RBP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 SLC39A2Q9NP94 309 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 ATRNL1Q5VV63 1379 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 SMCHD1A6NHR9 2005 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 ECM1Q16610 540 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 RSBN1LQ6PCB5 846 aaPredicted RBP18.28■□□□□ 0.52
COL4A1-204ENST00000543140 DEFB132Q7Z7B7 95 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 CSGALNACT2Q8N6G5 542 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 SPDYE2BA6NHP3 402 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 SPDYE6P0CI01 402 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 CCDC93Q567U6 631 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 ANKRD40Q6AI12 368 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 DHTKD1Q96HY7 919 aaPredicted RBP18.28■□□□□ 0.52
COL4A1-204ENST00000543140 DUSP9Q99956 384 aaKnown RBP18.28■□□□□ 0.52
COL4A1-204ENST00000543140 TMOD2Q9NZR1 351 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 PCDHA12Q9UN75 941 aa18.28■□□□□ 0.52
COL4A1-204ENST00000543140 FANCGO15287 622 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 DPEP1P16444 411 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 ECE1P42892 770 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 KIAA0895Q8NCT3 520 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 GMCL1P1Q8NEA9 526 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 P2RX5Q93086 422 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 P2RX7Q99572 595 aaKnown RBP18.27■□□□□ 0.52
COL4A1-204ENST00000543140 ANO3Q9BYT9 981 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 STK17AQ9UEE5 414 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 MEIS2O14770 477 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 IDEP14735 1019 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 DLGAP5Q15398 846 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 RAD9BQ6WBX8 426 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 AMNQ9BXJ7 453 aa18.27■□□□□ 0.52
COL4A1-204ENST00000543140 MAGEC2Q9UBF1 373 aaPredicted RBP18.27■□□□□ 0.52
COL4A1-204ENST00000543140 ITIH6Q6UXX5 1313 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 TPM1P09493 284 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 BMP3P12645 472 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 SYDE2Q5VT97 1194 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 RAD54LQ92698 747 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 THAP9Q9H5L6 903 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 VEZTQ9HBM0 779 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.26■□□□□ 0.51
COL4A1-204ENST00000543140 COL4A5P29400 1685 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 CCNE1P24864 410 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 CNNM4Q6P4Q7 775 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 FBXO11Q86XK2 927 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 CNGA4Q8IV77 575 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 CDAN1Q8IWY9 1227 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 RTKN2Q8IZC4 609 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 OGFOD1Q8N543 542 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 GMCL1Q96IK5 515 aa18.26■□□□□ 0.51
COL4A1-204ENST00000543140 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.26■□□□□ 0.51
COL4A1-204ENST00000543140 ZNF70Q9UC06 446 aaPredicted RBP18.26■□□□□ 0.51
COL4A1-204ENST00000543140 GCFC2P16383 781 aaKnown RBP18.25■□□□□ 0.51
COL4A1-204ENST00000543140 SEMA3FQ13275 785 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 ANKRD7Q92527 254 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 MAP7D2Q96T17 732 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 SSBP05455 408 aaKnown RBP eCLIP18.25■□□□□ 0.51
COL4A1-204ENST00000543140 KCNA3P22001 575 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 EEF1GP26641 437 aaKnown RBP18.25■□□□□ 0.51
COL4A1-204ENST00000543140 ACER1Q8TDN7 264 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 DDX12PQ92771 950 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 GLT8D2Q9H1C3 349 aa18.25■□□□□ 0.51
COL4A1-204ENST00000543140 MRPL44Q9H9J2 332 aaKnown RBP18.25■□□□□ 0.51
COL4A1-204ENST00000543140 A0A0U1RQJ8 604 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 B4DLN1 442 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 VIL1P09327 827 aaKnown RBP18.24■□□□□ 0.51
COL4A1-204ENST00000543140 HOXA13P31271 388 aaPredicted RBP18.24■□□□□ 0.51
COL4A1-204ENST00000543140 GNG11P61952 73 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 KIAA1755Q5JYT7 1200 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 MIGA2Q7L4E1 593 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 MB21D1Q8N884 522 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 ATRIPQ8WXE1 791 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 WDR24Q96S15 920 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 PSME4Q14997 1843 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 BICDL2A1A5D9 508 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 LGALS16A8MUM7 142 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 SLU7O95391 586 aaKnown RBP18.24■□□□□ 0.51
COL4A1-204ENST00000543140 STAT3P40763 770 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 TMEM119Q4V9L6 283 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 PRR16Q569H4 304 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 UNC13DQ70J99 1090 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 MTERF4Q7Z6M4 381 aaKnown RBP18.24■□□□□ 0.51
COL4A1-204ENST00000543140 LRRN4CLQ8ND94 238 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 GMLQ99445 158 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 TUBGCP2Q9BSJ2 902 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 SEMA6BQ9H3T3 888 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 LZTFL1Q9NQ48 299 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 ABHD10Q9NUJ1 306 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 HDAC9Q9UKV0 1011 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 PHLPP2Q6ZVD8 1323 aa18.24■□□□□ 0.51
COL4A1-204ENST00000543140 NKRFO15226 690 aaKnown RBP eCLIP18.23■□□□□ 0.51
COL4A1-204ENST00000543140 TUBB4AP04350 444 aa18.23■□□□□ 0.51
COL4A1-204ENST00000543140 CCDC175P0C221 793 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms