RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ZNF236Q9UL36 1845 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 PTPN22Q9Y2R2 807 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 ZSWIM8A7E2V4 1837 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 PLXNB2O15031 1838 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 LOC102724159A0A0B4J2E5 919 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 GUCY1B3Q02153 619 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 PWP2Q15269 919 aaKnown RBP19.61■□□□□ 0.73
LIG1-204ENST00000542460 FGD4Q96M96 766 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 MPHOSPH6Q99547 160 aaKnown RBP19.61■□□□□ 0.73
LIG1-204ENST00000542460 PCDHA6Q9UN73 950 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 PCDHA8Q9Y5H6 950 aa19.61■□□□□ 0.73
LIG1-204ENST00000542460 ASTN1O14525 1302 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 B4DLN1 442 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 H3BQV1 296 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 ADAMTS3O15072 1205 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 KRT2P35908 639 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 ALDH5A1P51649 535 aaPredicted RBP19.6■□□□□ 0.73
LIG1-204ENST00000542460 ARHGEF16Q5VV41 709 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 JAKMIP3Q5VZ66 844 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 OLFML2BQ68BL8 750 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 MSL3Q8N5Y2 521 aaKnown RBP19.6■□□□□ 0.73
LIG1-204ENST00000542460 PXYLP1Q8TE99 480 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 EHMT1Q9H9B1 1298 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 PXMP2Q9NR77 195 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 TMEM260Q9NX78 707 aa19.6■□□□□ 0.73
LIG1-204ENST00000542460 ASB14A6NK59 587 aa19.59■□□□□ 0.73
LIG1-204ENST00000542460 M0R2N6 131 aa19.59■□□□□ 0.73
LIG1-204ENST00000542460 ADCY3O60266 1144 aa19.59■□□□□ 0.73
LIG1-204ENST00000542460 PKN2Q16513 984 aaKnown RBP19.59■□□□□ 0.73
LIG1-204ENST00000542460 MAMDC4Q6UXC1 1216 aa19.59■□□□□ 0.73
LIG1-204ENST00000542460 DIS3L2Q8IYB7 885 aaKnown RBP19.59■□□□□ 0.73
LIG1-204ENST00000542460 IWS1Q96ST2 819 aa19.59■□□□□ 0.73
LIG1-204ENST00000542460 TINF2Q9BSI4 451 aa19.59■□□□□ 0.73
LIG1-204ENST00000542460 CCL14Q16627 93 aa19.58■□□□□ 0.73
LIG1-204ENST00000542460 RASGRP4Q8TDF6 673 aa19.58■□□□□ 0.73
LIG1-204ENST00000542460 OXER1Q8TDS5 423 aa19.58■□□□□ 0.73
LIG1-204ENST00000542460 PDCD2LQ9BRP1 358 aa19.58■□□□□ 0.73
LIG1-204ENST00000542460 FLRT1Q9NZU1 646 aa19.58■□□□□ 0.73
LIG1-204ENST00000542460 DAXXQ9UER7 740 aaPredicted RBP19.58■□□□□ 0.73
LIG1-204ENST00000542460 PTCH2Q9Y6C5 1203 aa19.58■□□□□ 0.73
LIG1-204ENST00000542460 FRMPD4Q14CM0 1322 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 RPTORQ8N122 1335 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 SYNGAP1Q96PV0 1343 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 BTBD18B2RXH4 712 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 PDIA4P13667 645 aaKnown RBP19.57■□□□□ 0.72
LIG1-204ENST00000542460 EIF2AK2P19525 551 aaKnown RBP19.57■□□□□ 0.72
LIG1-204ENST00000542460 SYT1P21579 422 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 KRT25Q7Z3Z0 450 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 SLAIN1Q8ND83 568 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 MORC4Q8TE76 937 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 ANO3Q9BYT9 981 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 DOCK3Q8IZD9 2030 aa19.57■□□□□ 0.72
LIG1-204ENST00000542460 IGHA2P01877 340 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 NR3C2P08235 984 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 EDNRBP24530 442 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 PGM5Q15124 567 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 TRIB2Q92519 343 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 PGBD1Q96JS3 809 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 FOXP1Q9H334 677 aaPredicted RBP19.56■□□□□ 0.72
LIG1-204ENST00000542460 RBBP6Q7Z6E9 1792 aaKnown RBP19.56■□□□□ 0.72
LIG1-204ENST00000542460 CCDC194A0A1B0GVG4 234 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 ELNP15502 786 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 GRK4P32298 578 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 SREBF1P36956 1147 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 UBXN2AP68543 259 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 PDE4DQ08499 809 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 NR5A1Q13285 461 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 GNL2Q13823 731 aaKnown RBP19.56■□□□□ 0.72
LIG1-204ENST00000542460 STXBP2Q15833 593 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 MFSD14CQ5VZR4 134 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 XRRA1Q6P2D8 792 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 FBXO46Q6PJ61 603 aaPredicted RBP19.56■□□□□ 0.72
LIG1-204ENST00000542460 ARMCX2Q7L311 632 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 VSIG10LQ86VR7 867 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 TNFRSF25Q93038 417 aa19.56■□□□□ 0.72
LIG1-204ENST00000542460 ZNFX1Q9P2E3 1918 aaKnown RBP19.55■□□□□ 0.72
LIG1-204ENST00000542460 HMGCRP04035 888 aa19.55■□□□□ 0.72
LIG1-204ENST00000542460 CCND2P30279 289 aa19.55■□□□□ 0.72
LIG1-204ENST00000542460 CYP2C19P33261 490 aa19.55■□□□□ 0.72
LIG1-204ENST00000542460 NONOQ15233 471 aaKnown RBP eCLIP19.55■□□□□ 0.72
LIG1-204ENST00000542460 PCNX4Q63HM2 1172 aa19.55■□□□□ 0.72
LIG1-204ENST00000542460 VPS37CA5D8V6 355 aaPredicted RBP19.54■□□□□ 0.72
LIG1-204ENST00000542460 STX6O43752 255 aa19.54■□□□□ 0.72
LIG1-204ENST00000542460 SNAI1O95863 264 aaPredicted RBP19.54■□□□□ 0.72
LIG1-204ENST00000542460 MYCLP12524 364 aaPredicted RBP19.54■□□□□ 0.72
LIG1-204ENST00000542460 U2AF2P26368 475 aaKnown RBP eCLIP19.54■□□□□ 0.72
LIG1-204ENST00000542460 MCTP1Q6DN14 999 aa19.54■□□□□ 0.72
LIG1-204ENST00000542460 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.54■□□□□ 0.72
LIG1-204ENST00000542460 CNPY2Q9Y2B0 182 aa19.54■□□□□ 0.72
LIG1-204ENST00000542460 DDX49Q9Y6V7 483 aaKnown RBP19.54■□□□□ 0.72
LIG1-204ENST00000542460 EIF3JO75822 258 aaKnown RBP19.53■□□□□ 0.72
LIG1-204ENST00000542460 STAM2O75886 525 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 ARHGAP4P98171 946 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 PIK3AP1Q6ZUJ8 805 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 NOSTRINQ8IVI9 506 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 IL31RAQ8NI17 732 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 TBCKQ8TEA7 893 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 CRYGNQ8WXF5 182 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 ABHD16BQ9H3Z7 469 aa19.53■□□□□ 0.72
LIG1-204ENST00000542460 NRBP1Q9UHY1 535 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms