RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 KIF5CO60282 957 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 TUBB4AP04350 444 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 ME1P48163 572 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 CDK8P49336 464 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 FAM160A1Q05DH4 1040 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 GABPAQ06546 454 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 SLC35G1Q2M3R5 365 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 TRIM42Q8IWZ5 723 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 DIS3L2Q8IYB7 885 aaKnown RBP8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 OXER1Q8TDS5 423 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 WDR24Q96S15 920 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 EYA3Q99504 573 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 DUSP9Q99956 384 aaKnown RBP8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 PSME4Q14997 1843 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 ANKRD62A6NC57 917 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 GPR37O15354 613 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 FKBP1AP62942 108 aaKnown RBP8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 TRIM29Q14134 588 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 APOBEC3HQ6NTF7 200 aaKnown RBP8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 HHIPL2Q6UWX4 724 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 PODNQ7Z5L7 613 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 STAG2Q8N3U4 1231 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 FSIP1Q8NA03 581 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 GOLGA1Q92805 767 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 TNFRSF25Q93038 417 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 TEKT1Q969V4 418 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 AGBL1Q96MI9 1066 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 DBNDD1Q9H9R9 158 aa8.91□□□□□ -0.98
PDLIM5-221ENST00000542407 PPP6R2O75170 966 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 CCDC175P0C221 793 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 BDNFP23560 247 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 LIG3P49916 1009 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 APLP1P51693 650 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 STK38Q15208 465 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 ZNF394Q53GI3 561 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 DACT2Q5SW24 774 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 ZNF662Q6ZS27 426 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 CNNM3Q8NE01 707 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 NEK9Q8TD19 979 aa8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 MRPS27Q92552 414 aaKnown RBP8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 POLR3CQ9BUI4 534 aaPredicted RBP8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 TTF2Q9UNY4 1162 aaKnown RBP8.9□□□□□ -0.98
PDLIM5-221ENST00000542407 FAM237AA0A1B0GTK4 181 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 hCG_1642624A0A1W2PR95 340 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 F8W031 263 aaPredicted RBP8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 SNUPNO95149 360 aaKnown RBP8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 LMNB1P20700 586 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 NDUFA8P51970 172 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 MCCD1P59942 119 aaPredicted RBP8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 NR5A1Q13285 461 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 GRM4Q14833 912 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 DPCR1Q3MIW9 517 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 LRRC31Q6UY01 552 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 AMOTL1Q8IY63 956 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 PDILTQ8N807 584 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 MORC4Q8TE76 937 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 CNKSR1Q969H4 720 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 MKNK2Q9HBH9 465 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 VPS54Q9P1Q0 977 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 MAD2L2Q9UI95 211 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 V9GY48 417 aaPredicted RBP8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 COL4A5P29400 1685 aa8.9□□□□□ -0.99
PDLIM5-221ENST00000542407 ECE2O60344 883 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 VEGFAP15692 232 aaPredicted RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 TXLNAP40222 546 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 PDIA5Q14554 519 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 EARS2Q5JPH6 523 aaKnown RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 CDC42EP5Q6NZY7 148 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 HDXQ7Z353 690 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 DEFB132Q7Z7B7 95 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 TADA2BQ86TJ2 420 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 PNMA1Q8ND90 353 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 NEDD1Q8NHV4 660 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 UHMK1Q8TAS1 419 aaKnown RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 RSPH1Q8WYR4 309 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 RABGGTAQ92696 567 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 DHX58Q96C10 678 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 METTL14Q9HCE5 456 aaKnown RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 ZSCAN9O15535 394 aaPredicted RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 ZSCAN12O43309 604 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 SERPINC1P01008 464 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 TSPY3P0CV98 308 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 TSPY8P0CW00 308 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 IBSPP21815 317 aaPredicted RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 SCNN1DP51172 638 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 ICA1Q05084 483 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 KARSQ15046 597 aaKnown RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 STRIP1Q5VSL9 837 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 SAMD3Q8N6K7 520 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 GIMAP7Q8NHV1 300 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 CTCFLQ8NI51 663 aaPredicted RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 TMEM47Q9BQJ4 181 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 MRIQ9BWK5 157 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 TRIM6Q9C030 488 aaPredicted RBP8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 RABEP2Q9H5N1 569 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 KAT14Q9H8E8 782 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 SERPINA10Q9UK55 444 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 HPSEQ9Y251 543 aa8.89□□□□□ -0.99
PDLIM5-221ENST00000542407 ITM2BQ9Y287 266 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms