RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 RBBP6Q7Z6E9 1792 aaKnown RBP20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 ZNFX1Q9P2E3 1918 aaKnown RBP20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 CENPFP49454 3210 aa20.07■□□□□ 0.8
CLSTN3-210ENST00000540931 PGK2P07205 417 aa20.06■□□□□ 0.8
CLSTN3-210ENST00000540931 C8orf76Q96K31 380 aa20.06■□□□□ 0.8
CLSTN3-210ENST00000540931 ABHD16BQ9H3Z7 469 aa20.06■□□□□ 0.8
CLSTN3-210ENST00000540931 MEIS2O14770 477 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 OPLAHO14841 1288 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 FDPSP14324 419 aaKnown RBP20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 ALDH5A1P51649 535 aaPredicted RBP20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 STXBP2Q15833 593 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 MORC4Q8TE76 937 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 PHF20Q9BVI0 1012 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 VPS54Q9P1Q0 977 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 BIN2Q9UBW5 565 aaPredicted RBP20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 PTCH2Q9Y6C5 1203 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 DOCK3Q8IZD9 2030 aa20.05■□□□□ 0.8
CLSTN3-210ENST00000540931 MSCO60682 206 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 ECM2O94769 699 aaPredicted RBP20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 EN2P19622 333 aaPredicted RBP20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 PDE4DQ08499 809 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 KCNV1Q6PIU1 500 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 SLC30A10Q6XR72 485 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 BLIDQ8IZY5 108 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 NPLOC4Q8TAT6 608 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 NAP1L4Q99733 375 aaKnown RBP20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 VTA1Q9NP79 307 aa20.04■□□□□ 0.8
CLSTN3-210ENST00000540931 JAK2O60674 1132 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 CCND2P30279 289 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 ANP32AP39687 249 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 CNTN2Q02246 1040 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 ST3GAL1Q11201 340 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 USP17L6PQ6QN14 398 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 KRT25Q7Z3Z0 450 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 FCHSD1Q86WN1 690 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 FBXO18Q8NFZ0 1043 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 PXMP2Q9NR77 195 aa20.03■□□□□ 0.8
CLSTN3-210ENST00000540931 FRMPD4Q14CM0 1322 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 BRCA2P51587 3418 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 MAFGO15525 162 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 EIF3JO75822 258 aaKnown RBP20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 MMP1P03956 469 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 EDNRBP24530 442 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 GJB2P29033 226 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 HOXA13P31271 388 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 KRT2P35908 639 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 CLK2P49760 499 aaKnown RBP20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 GNPTABQ3T906 1256 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 TYW1BQ6NUM6 668 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 ARMCX2Q7L311 632 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 TRIB2Q92519 343 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 CDHR1Q96JP9 859 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 DAXXQ9UER7 740 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 PCDHA6Q9UN73 950 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 PCDHA8Q9Y5H6 950 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 PLXNA1Q9UIW2 1896 aa20.02■□□□□ 0.8
CLSTN3-210ENST00000540931 SMCHD1A6NHR9 2005 aa20.02■□□□□ 0.79
CLSTN3-210ENST00000540931 RPTORQ8N122 1335 aa20.02■□□□□ 0.79
CLSTN3-210ENST00000540931 SOWAHBA6NEL2 793 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 H3BQV1 296 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 IGHA2P01877 340 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 NR3C2P08235 984 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 PCNX4Q63HM2 1172 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 TBC1D5Q92609 795 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 TAAR1Q96RJ0 339 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 PDCD2LQ9BRP1 358 aa20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 FOXP1Q9H334 677 aaPredicted RBP20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 HMX1Q9NP08 348 aaPredicted RBP20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.01■□□□□ 0.79
CLSTN3-210ENST00000540931 CCDC194A0A1B0GVG4 234 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 PPFIA3O75145 1194 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 TGFB3P10600 412 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 USP11P51784 963 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 GNL2Q13823 731 aaKnown RBP20■□□□□ 0.79
CLSTN3-210ENST00000540931 PGM5Q15124 567 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 MAP3K21Q5TCX8 1036 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 LARP1BQ659C4 914 aaKnown RBP20■□□□□ 0.79
CLSTN3-210ENST00000540931 KRT40Q6A162 431 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 NLRX1Q86UT6 975 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 VSIG10LQ86VR7 867 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 ZNF333Q96JL9 665 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 ANO3Q9BYT9 981 aa20■□□□□ 0.79
CLSTN3-210ENST00000540931 NKRFO15226 690 aaKnown RBP eCLIP19.99■□□□□ 0.79
CLSTN3-210ENST00000540931 INHAP05111 366 aa19.99■□□□□ 0.79
CLSTN3-210ENST00000540931 SREBF1P36956 1147 aa19.99■□□□□ 0.79
CLSTN3-210ENST00000540931 NONOQ15233 471 aaKnown RBP eCLIP19.99■□□□□ 0.79
CLSTN3-210ENST00000540931 IQSEC1Q6DN90 963 aa19.99■□□□□ 0.79
CLSTN3-210ENST00000540931 FAM184BQ9ULE4 1060 aa19.99■□□□□ 0.79
CLSTN3-210ENST00000540931 CYP3A4P08684 503 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 PRKAR2AP13861 404 aaKnown RBP19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 AKR1A1P14550 325 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 ELNP15502 786 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 TAL1P17542 331 aaPredicted RBP19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 EIF2AK2P19525 551 aaKnown RBP19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 FXR1P51114 621 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 ACVR2BQ13705 512 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 CCL14Q16627 93 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 SCFD2Q8WU76 684 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 FGD4Q96M96 766 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 TMEM106CQ9BVX2 250 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms