RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 SMCHD1A6NHR9 2005 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 CNTNAP5Q8WYK1 1306 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 SYNRGQ9UMZ2 1314 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 DUSP11O75319 330 aaKnown RBP10.65□□□□□ -0.7
SNHG1-215ENST00000540904 C6orf222P0C671 652 aaPredicted RBP10.65□□□□□ -0.7
SNHG1-215ENST00000540904 COL6A1P12109 1028 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 EDNRBP24530 442 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 PDIA3P30101 505 aaKnown RBP10.65□□□□□ -0.7
SNHG1-215ENST00000540904 ANAPC15P60006 121 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 FUT2Q10981 343 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 PPP2R5BQ15173 497 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 C8orf34Q49A92 452 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 IQSEC1Q6DN90 963 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 TAPT1Q6NXT6 567 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 HEATR3Q7Z4Q2 680 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 GPKOWQ92917 476 aaPredicted RBP eCLIP10.65□□□□□ -0.72e-31■■■□□ 19.1
SNHG1-215ENST00000540904 SPC25Q9HBM1 224 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 MAP3K20Q9NYL2 800 aaKnown RBP10.65□□□□□ -0.7
SNHG1-215ENST00000540904 PLXNA1Q9UIW2 1896 aa10.65□□□□□ -0.7
SNHG1-215ENST00000540904 EVI5O60447 810 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 ADAMTS4O75173 837 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 SMPD1P17405 629 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 PTGS1P23219 599 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 ATN1P54259 1190 aaPredicted RBP10.64□□□□□ -0.71
SNHG1-215ENST00000540904 EVCP57679 992 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 CCT2P78371 535 aaKnown RBP10.64□□□□□ -0.71
SNHG1-215ENST00000540904 IRX5P78411 483 aaPredicted RBP10.64□□□□□ -0.71
SNHG1-215ENST00000540904 GHRHRQ02643 423 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 TMEM63BQ5T3F8 832 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 SAMD3Q8N6K7 520 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 CUL5Q93034 780 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 FERMT2Q96AC1 680 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 IWS1Q96ST2 819 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 WDR11Q9BZH6 1224 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 PSTPIP2Q9H939 334 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 NCOA5Q9HCD5 579 aaKnown RBP10.64□□□□□ -0.71
SNHG1-215ENST00000540904 PXMP2Q9NR77 195 aa10.64□□□□□ -0.71
SNHG1-215ENST00000540904 MYADML2A6NDP7 307 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 DYNC1LI2O43237 492 aaPredicted RBP10.63□□□□□ -0.71
SNHG1-215ENST00000540904 PPFIA3O75145 1194 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 NR3C2P08235 984 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 MYCLP12524 364 aaPredicted RBP10.63□□□□□ -0.71
SNHG1-215ENST00000540904 GJA9P57773 515 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 STK3Q13188 491 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 STXBP2Q15833 593 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 KCNA10Q16322 511 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 LRRC26Q2I0M4 334 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 GNASQ5JWF2 1037 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 WWC2Q6AWC2 1192 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 USP17L6PQ6QN14 398 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 SEPT14Q6ZU15 432 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 TLK2Q86UE8 772 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 KLHDC9Q8NEP7 349 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 SMARCC2Q8TAQ2 1214 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 SCFD2Q8WU76 684 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 PHKBQ93100 1093 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 PDCD2LQ9BRP1 358 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 AP5M1Q9H0R1 490 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 GNEQ9Y223 722 aaKnown RBP10.63□□□□□ -0.71
SNHG1-215ENST00000540904 GTF3C3Q9Y5Q9 886 aa10.63□□□□□ -0.71
SNHG1-215ENST00000540904 BAZ2BQ9UIF8 2168 aaKnown RBP10.62□□□□□ -0.71
SNHG1-215ENST00000540904 H0YGN5 161 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 MEIS2O14770 477 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 EIF3JO75822 258 aaKnown RBP10.62□□□□□ -0.71
SNHG1-215ENST00000540904 ACLYP53396 1101 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 NAPAP54920 295 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 BEX3Q00994 111 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 AKAP17AQ02040 695 aaKnown RBP10.62□□□□□ -0.71
SNHG1-215ENST00000540904 PGM5Q15124 567 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 DUSP28Q4G0W2 176 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 C7orf61Q8IZ16 206 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 IL31RAQ8NI17 732 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 ZNF274Q96GC6 653 aaPredicted RBP10.62□□□□□ -0.71
SNHG1-215ENST00000540904 ZFP91Q96JP5 570 aaPredicted RBP10.62□□□□□ -0.71
SNHG1-215ENST00000540904 UPF3AQ9H1J1 476 aaKnown RBP10.62□□□□□ -0.71
SNHG1-215ENST00000540904 BARHL2Q9NY43 387 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 PHF24Q9UPV7 400 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 NR2E3Q9Y5X4 410 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 NID2Q14112 1375 aa10.62□□□□□ -0.71
SNHG1-215ENST00000540904 LCTP09848 1927 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 A0A1W2PQ45 241 aaPredicted RBP10.61□□□□□ -0.71
SNHG1-215ENST00000540904 A0A1W2PQY0 241 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 RBM47A0AV96 593 aaKnown RBP10.61□□□□□ -0.71
SNHG1-215ENST00000540904 MOXD2PA6NHM9 499 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 STXBP3O00186 592 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 PIK3CDO00329 1044 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 CPLX1O14810 134 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 CTAGE5O15320 804 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 ASGR1P07306 291 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 TXNP10599 105 aaKnown RBP10.61□□□□□ -0.71
SNHG1-215ENST00000540904 SCG2P13521 617 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 CST5P28325 142 aaPredicted RBP10.61□□□□□ -0.71
SNHG1-215ENST00000540904 CCND2P30279 289 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 NEK4P51957 841 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 AK2P54819 239 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 TTLL4Q14679 1199 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 ANKRD1Q15327 319 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 NTRK3Q16288 839 aa10.61□□□□□ -0.71
SNHG1-215ENST00000540904 FSCN1Q16658 493 aaKnown RBP10.61□□□□□ -0.71
SNHG1-215ENST00000540904 UBE2SQ16763 222 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms