RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 CNPY4Q8N129 248 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 GPBAR1Q8TDU6 330 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 TTC17Q96AE7 1141 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 SCLT1Q96NL6 688 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 TTC1Q99614 292 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 SELENOOQ9BVL4 669 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 FAM53CQ9NYF3 392 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 IP6K2Q9UHH9 426 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 RCAN3Q9UKA8 241 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 U3KQE9 123 aa6.66□□□□□ -1.34
PRKDC-209ENST00000540819 TRAV20A0A0B4J274 112 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 SARSP49591 514 aaKnown RBP6.65□□□□□ -1.34
PRKDC-209ENST00000540819 TMPRSS15P98073 1019 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 RPL6Q02878 288 aaKnown RBP6.65□□□□□ -1.34
PRKDC-209ENST00000540819 IKZF1Q13422 519 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 LRRC14Q15048 493 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 COBLL1Q53SF7 1204 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 SCUBE1Q8IWY4 988 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 STK35Q8TDR2 534 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 GJA10Q969M2 543 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 FAM84AQ96KN4 292 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 PLCB1Q9NQ66 1216 aa6.65□□□□□ -1.34
PRKDC-209ENST00000540819 POLR3KQ9Y2Y1 108 aaPredicted RBP6.65□□□□□ -1.34
PRKDC-209ENST00000540819 LRRC10BA6NIK2 292 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 GNAT3A8MTJ3 354 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 IGF2BP3O00425 579 aaKnown RBP eCLIP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 TCERG1O14776 1098 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 ERC2O15083 957 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 EPB41L2O43491 1005 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 ZEB2O60315 1214 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 DNAJC8O75937 253 aaPredicted RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 TYRP1P17643 537 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 SERPINB3P29508 390 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 ZP2Q05996 745 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 KCNMB1Q16558 191 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 INTS3Q68E01 1043 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 TPH2Q8IWU9 490 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 SNRNP27Q8WVK2 155 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 ATXN2LQ8WWM7 1075 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 USP7Q93009 1102 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 TRMT2BQ96GJ1 504 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 HEXIM2Q96MH2 286 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 MENTQ9BUN1 341 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 KRTAP4-7Q9BYR0 210 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 IFT22Q9H7X7 185 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 ARHGEF4Q9NR80 690 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 TPX2Q9ULW0 747 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 APOBEC2Q9Y235 224 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 LUC7L2Q9Y383 392 aaKnown RBP6.64□□□□□ -1.35
PRKDC-209ENST00000540819 CSADQ9Y600 493 aa6.64□□□□□ -1.35
PRKDC-209ENST00000540819 ANP32CO43423 234 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 PGRP06401 933 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 SRGNP10124 158 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 BMP6P22004 513 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 NEK4P51957 841 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 GJA9P57773 515 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 SUMO1P63165 101 aaKnown RBP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 GTF2H3Q13889 308 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 HSP90AA2PQ14568 343 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 PCBP1Q15365 356 aaKnown RBP eCLIP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 TRIM61Q5EBN2 209 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 PPM1JQ5JR12 505 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 KIAA1211LQ6NV74 962 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 UNC5AQ6ZN44 842 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 FAM43BQ6ZT52 329 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 ZSWIM9Q86XI8 627 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 CCDC89Q8N998 374 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 PPHLN1Q8NEY8 458 aaKnown RBP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 FLAD1Q8NFF5 587 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 AARSD1Q9BTE6 412 aaKnown RBP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 ANTXR1Q9H6X2 564 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 PRDM7Q9NQW5 492 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 MAN1C1Q9NR34 630 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 SETD1BQ9UPS6 1966 aaKnown RBP6.63□□□□□ -1.35
PRKDC-209ENST00000540819 ANKRD6Q9Y2G4 727 aa6.63□□□□□ -1.35
PRKDC-209ENST00000540819 LTBP3Q9NS15 1303 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 A0A1W2PQU0 124 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 DCDC2CA8MYV0 355 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 APAF1O14727 1248 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 FANCGO15287 622 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 PIP5K1CO60331 668 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 RNASEH2AO75792 299 aaKnown RBP6.62□□□□□ -1.35
PRKDC-209ENST00000540819 ASLP04424 464 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 CYP2C19P33261 490 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 DDIT3P35638 169 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 AFMP43652 599 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 ZNF143P52747 638 aaPredicted RBP6.62□□□□□ -1.35
PRKDC-209ENST00000540819 CHAF1AQ13111 956 aaPredicted RBP6.62□□□□□ -1.35
PRKDC-209ENST00000540819 PTPN21Q16825 1174 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 FBLN7Q53RD9 439 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 SCARA3Q6AZY7 606 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 FAM214BQ7L5A3 538 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 C12orf40Q86WS4 652 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 KCT2Q8NC54 265 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 VPS37AQ8NEZ2 397 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 CLIP3Q96DZ5 547 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 SLC13A1Q9BZW2 595 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 MTFR1LQ9H019 292 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 TRIM39Q9HCM9 518 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 FBXO2Q9UK22 296 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms