RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 MAGEA10P43363 369 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-238ENST00000540663 PPP2R5BQ15173 497 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 STXBP2Q15833 593 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 ANKRD33Q7Z3H0 272 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 TBC1D5Q92609 795 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 TOX2Q96NM4 488 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 TAAR1Q96RJ0 339 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 LBHD1Q9BQE6 289 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-238ENST00000540663 MYL10Q9BUA6 226 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 COL20A1Q9P218 1284 aa13.68□□□□□ -0.22
SYNE1-238ENST00000540663 SEC63Q9UGP8 760 aaKnown RBP13.68□□□□□ -0.22
SYNE1-238ENST00000540663 A0A0U1RQG5 324 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-238ENST00000540663 DCDC2CA8MYV0 355 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 GCOM1H8Y6P7 765 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-238ENST00000540663 POLR2MP0CAP2 368 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 HSPA4P34932 840 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 RCAN1P53805 252 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 TLE2Q04725 743 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 COL9A3Q14050 684 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-238ENST00000540663 TTLL4Q14679 1199 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 ADCK5Q3MIX3 580 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 BRDTQ58F21 947 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-238ENST00000540663 ARHGEF16Q5VV41 709 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 APOA5Q6Q788 366 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 FANCBQ8NB91 859 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 LRRC2Q9BYS8 371 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 PDLIM7Q9NR12 457 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 PXMP2Q9NR77 195 aa13.67□□□□□ -0.22
SYNE1-238ENST00000540663 RBM28Q9NW13 759 aaKnown RBP13.67□□□□□ -0.22
SYNE1-238ENST00000540663 EIF3JO75822 258 aaKnown RBP13.66□□□□□ -0.22
SYNE1-238ENST00000540663 CLTBP09497 229 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 CPT1AP50416 773 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 BEX3Q00994 111 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 TMTC3Q6ZXV5 915 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 MICU3Q86XE3 530 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 SRBD1Q8N5C6 995 aaKnown RBP13.66□□□□□ -0.22
SYNE1-238ENST00000540663 OR6J1Q8NGC5 347 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 VTI1AQ96AJ9 217 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 POLR3EQ9NVU0 708 aa13.66□□□□□ -0.22
SYNE1-238ENST00000540663 BAZ2BQ9UIF8 2168 aaKnown RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 ARVCFO00192 962 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 KIAA0355O15063 1070 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 ZBTB43O43298 467 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 KPNA6O60684 536 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 PQBP1O60828 265 aaKnown RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 PLEKHA8P1O95397 391 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 SLC34A2O95436 690 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 NR3C2P08235 984 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 TXNP10599 105 aaKnown RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 EIF2AK2P19525 551 aaKnown RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 PSMA5P28066 241 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 CDK7P50613 346 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 IRX5P78411 483 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 FGD1P98174 961 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 JAKMIP1Q96N16 626 aaKnown RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 PDCD2LQ9BRP1 358 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 UBE2OQ9C0C9 1292 aaKnown RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 PRDM5Q9NQX1 630 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-238ENST00000540663 SNX14Q9Y5W7 946 aa13.65□□□□□ -0.22
SYNE1-238ENST00000540663 TLR3O15455 904 aaKnown RBP13.64□□□□□ -0.23
SYNE1-238ENST00000540663 RXRAP19793 462 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 CCND2P30279 289 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 HOXA13P31271 388 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-238ENST00000540663 FXR1P51114 621 aaKnown RBP eCLIP13.64□□□□□ -0.23
SYNE1-238ENST00000540663 RTN1Q16799 776 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 CCDC62Q6P9F0 684 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 KCNV1Q6PIU1 500 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 BLOC1S2Q6QNY1 142 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 CXCL17Q6UXB2 119 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 TEX2Q8IWB9 1127 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 FBXL16Q8N461 479 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 SLC43A3Q8NBI5 491 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 PIBF1Q8WXW3 757 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 CUL5Q93034 780 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 FRMPD4Q14CM0 1322 aa13.64□□□□□ -0.23
SYNE1-238ENST00000540663 LTBP2Q14767 1821 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 KLF18A0A0U1RQI7 1052 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 TRIM43BA6NCK2 446 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 A6NJR5 290 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 PIK3CDO00329 1044 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 STAM2O75886 525 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 GH1P01241 217 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 MDM2Q00987 491 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-238ENST00000540663 FAAP100Q0VG06 881 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 PGM5Q15124 567 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 TMEM63BQ5T3F8 832 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 VSIG10LQ86VR7 867 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 TDHQ8IZJ6 230 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 TRIM43Q96BQ3 446 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-238ENST00000540663 TCEANC2Q96MN5 208 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 TMEM39AQ9NV64 488 aa13.63□□□□□ -0.23
SYNE1-238ENST00000540663 NID2Q14112 1375 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 CCDC196A0A1B0GTZ2 297 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 GOLGA8AA7E2F4 631 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 GOLGA8BA8MQT2 603 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 EIF5BO60841 1220 aaKnown RBP13.62□□□□□ -0.23
SYNE1-238ENST00000540663 ARIH2O95376 493 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 TGFB3P10600 412 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 PTGS1P23219 599 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 RPS6KB1P23443 525 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms