RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PURBQ96QR8 312 aaKnown RBP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 MAF1Q9H063 256 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 ATP6V1DQ9Y5K8 247 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 KIAA0100Q14667 2235 aaKnown RBP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 BRCA2P51587 3418 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 TOB1P50616 345 aaPredicted RBP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 LACTBP83111 547 aaPredicted RBP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 CCAR1Q8IX12 1150 aaKnown RBP21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 TBCKQ8TEA7 893 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 TAAR1Q96RJ0 339 aa21.6■■□□□ 1.05
TNFRSF1A-213ENST00000540022 WNT7AO00755 349 aa21.59■■□□□ 1.05
TNFRSF1A-213ENST00000540022 DNM1Q05193 864 aaKnown RBP21.59■■□□□ 1.05
TNFRSF1A-213ENST00000540022 PTPN22Q9Y2R2 807 aa21.59■■□□□ 1.05
TNFRSF1A-213ENST00000540022 EDIL3O43854 480 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 FCER1AP12319 257 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ATP2B1P20020 1258 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 MAPK4P31152 587 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 RGS19P49795 217 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 NBR1Q14596 966 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 KCTD2Q14681 263 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 RILPL1Q5EBL4 403 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 GPR142Q7Z601 462 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TRIM47Q96LD4 638 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 MMP19Q99542 508 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PFASO15067 1338 aa21.58■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CRYGNQ8WXF5 182 aa21.57■■□□□ 1.04
TNFRSF1A-213ENST00000540022 FTOQ9C0B1 505 aaKnown RBP eCLIP21.57■■□□□ 1.04
TNFRSF1A-213ENST00000540022 SREBF1P36956 1147 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PSMC4P43686 418 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 UBXN2AP68543 259 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CNTN2Q02246 1040 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PLEKHH3Q7Z736 793 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 NEK8Q86SG6 692 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 USP28Q96RU2 1077 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TFIP11Q9UBB9 837 aaKnown RBP21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 NOL7Q9UMY1 257 aaKnown RBP21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 RPTORQ8N122 1335 aa21.56■■□□□ 1.04
TNFRSF1A-213ENST00000540022 DNAJC25-GNG10A0A024R161 153 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 POTEB2H3BUK9 544 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 STRNO43815 780 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PGK2P07205 417 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PTPREP23469 700 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TRAPPC10P48553 1259 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 FAM133AQ8N9E0 248 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ZNF396Q96N95 335 aaPredicted RBP21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 RMDN3Q96TC7 470 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PCDHB6Q9Y5E3 794 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 IVNS1ABPQ9Y6Y0 642 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 SOX10P56693 466 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ARHGAP4P98171 946 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 LETM2Q2VYF4 491 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TTC38Q5R3I4 469 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ABRAQ8N0Z2 381 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 EHMT1Q9H9B1 1298 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PXMP2Q9NR77 195 aa21.55■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ASTN1O14525 1302 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 FRMPD4Q14CM0 1322 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 SOWAHBA6NEL2 793 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 BAG4O95429 457 aaKnown RBP21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 EIF2AK2P19525 551 aaKnown RBP21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ADORA2AP29274 412 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CEBPZQ03701 1054 aaKnown RBP21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 KIF22Q14807 665 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ARHGEF6Q15052 776 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 IL31RAQ8NI17 732 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PDCD2LQ9BRP1 358 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CLIC4Q9Y696 253 aa21.54■■□□□ 1.04
TNFRSF1A-213ENST00000540022 NCLP19338 710 aaKnown RBP21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 USP11P51784 963 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 KRT85P78386 507 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 GRB14Q14449 540 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ZNF174Q15697 407 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ARHGEF16Q5VV41 709 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ATL3Q6DD88 541 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CLEC17AQ6ZS10 378 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 NSUN6Q8TEA1 469 aaKnown RBP21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 FGD4Q96M96 766 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CNPY2Q9Y2B0 182 aa21.53■■□□□ 1.04
TNFRSF1A-213ENST00000540022 RBBP6Q7Z6E9 1792 aaKnown RBP21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TNPO2O14787 897 aaKnown RBP21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TNRC18O15417 2968 aaPredicted RBP21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 COBLO75128 1261 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 TDP2O95551 362 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 CYP3A4P08684 503 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 FCGRTP55899 365 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 PGM5Q15124 567 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 SF3A1Q15459 793 aaKnown RBP21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 ANO1Q5XXA6 986 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 DNERQ8NFT8 737 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 RTEL1Q9NZ71 1219 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 GABRQQ9UN88 632 aa21.52■■□□□ 1.04
TNFRSF1A-213ENST00000540022 SLC15A5A6NIM6 579 aa21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CCNT1O60563 726 aaKnown RBP21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MCM7P33993 719 aa21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 NASPP49321 788 aaPredicted RBP21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ALDH5A1P51649 535 aaPredicted RBP21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ZFP91Q96JP5 570 aaPredicted RBP21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 POLR3EQ9NVU0 708 aa21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 GJD2Q9UKL4 321 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms