RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 FERMT2Q96AC1 680 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 LSG1Q9H089 658 aaKnown RBP12.06□□□□□ -0.48
CSDE1-217ENST00000534699 DYNC1LI2O43237 492 aaPredicted RBP12.06□□□□□ -0.48
CSDE1-217ENST00000534699 HOXD8P13378 290 aaPredicted RBP12.06□□□□□ -0.48
CSDE1-217ENST00000534699 CALML3P27482 149 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 PTH1RQ03431 593 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 RBL2Q08999 1139 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 TROAPQ12815 778 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 LAMC2Q13753 1193 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 RASIP1Q5U651 963 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 MCTP2Q6DN12 878 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 CTCFLQ8NI51 663 aaPredicted RBP12.06□□□□□ -0.48
CSDE1-217ENST00000534699 ZKSCAN3Q9BRR0 538 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 GLT8D2Q9H1C3 349 aa12.06□□□□□ -0.48
CSDE1-217ENST00000534699 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 PIK3CDO00329 1044 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 MDM2Q00987 491 aaPredicted RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 NECTIN1Q15223 517 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 TMEM67Q5HYA8 995 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 NOL8Q76FK4 1167 aaKnown RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 SGMS1Q86VZ5 419 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 IL23AQ9NPF7 189 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 TANC1Q9C0D5 1861 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 ADCY6O43306 1168 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 ICAM3P32942 547 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 PURAQ00577 322 aaKnown RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 FBXO16Q8IX29 292 aaPredicted RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 PRDM5Q9NQX1 630 aaPredicted RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 PXMP2Q9NR77 195 aa12.05□□□□□ -0.48
CSDE1-217ENST00000534699 RBM28Q9NW13 759 aaKnown RBP12.05□□□□□ -0.48
CSDE1-217ENST00000534699 MYADML2A6NDP7 307 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 GCOM1H8Y6P7 765 aaPredicted RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 PITPNM1O00562 1244 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 POLR2MP0CAP2 368 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 ARHGEF16Q5VV41 709 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 FBXL16Q8N461 479 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 GIMAP8Q8ND71 665 aaPredicted RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 HERVK_113Q902F9 699 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 VTI1AQ96AJ9 217 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 RMDN3Q96TC7 470 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 UBA5Q9GZZ9 404 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 PQBP1O60828 265 aaKnown RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 CDC45O75419 566 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 CASTP20810 708 aaKnown RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 CCND2P30279 289 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 SNAP25P60880 206 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 BFSP2Q13515 415 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 ZNF697Q5TEC3 545 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 PPP1R18Q6NYC8 613 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 RRP36Q96EU6 259 aaKnown RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 EHMT1Q9H9B1 1298 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 MTMR7Q9Y216 660 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 DHX16O60231 1041 aaKnown RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 RPLP2P05387 115 aaKnown RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 TXNP10599 105 aaKnown RBP12.04□□□□□ -0.48
CSDE1-217ENST00000534699 RAB30Q15771 203 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 CAGE1Q8TC20 777 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 KCNB2Q92953 911 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 CUL5Q93034 780 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 MTMR10Q9NXD2 777 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 PCDHA1Q9Y5I3 950 aa12.04□□□□□ -0.48
CSDE1-217ENST00000534699 SOX1O00570 391 aaPredicted RBP12.03□□□□□ -0.48
CSDE1-217ENST00000534699 SH2B2O14492 632 aaPredicted RBP12.03□□□□□ -0.48
CSDE1-217ENST00000534699 CAND2O75155 1236 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 MYCNP04198 464 aaPredicted RBP12.03□□□□□ -0.48
CSDE1-217ENST00000534699 NR3C2P08235 984 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 GOLGA8HP0CJ92 632 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 GNPTABQ3T906 1256 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 SYNE3Q6ZMZ3 975 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 VSIG10LQ86VR7 867 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 ZNF654Q8IZM8 581 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 FAM177A1Q8N128 213 aaPredicted RBP12.03□□□□□ -0.48
CSDE1-217ENST00000534699 IL25Q9H293 177 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 LY9Q9HBG7 655 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 HTTP42858 3142 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 CCDC69A6NI79 296 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 SLC27A2O14975 620 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 SHHQ15465 462 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 USH1GQ495M9 461 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 PPTC7Q8NI37 304 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 CDHR1Q96JP9 859 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 TAAR1Q96RJ0 339 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 PDCD2LQ9BRP1 358 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 ALDH8A1Q9H2A2 487 aaPredicted RBP12.03□□□□□ -0.48
CSDE1-217ENST00000534699 PDGFCQ9NRA1 345 aa12.03□□□□□ -0.48
CSDE1-217ENST00000534699 SEC63Q9UGP8 760 aaKnown RBP12.03□□□□□ -0.48
CSDE1-217ENST00000534699 MAFGO15525 162 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 DGKDQ16760 1214 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 CREB3L3Q68CJ9 461 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 RASGRP2Q7LDG7 609 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 SH3RF1Q7Z6J0 888 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 RNPC3Q96LT9 517 aaKnown RBP12.02□□□□□ -0.49
CSDE1-217ENST00000534699 NOC4LQ9BVI4 516 aaKnown RBP12.02□□□□□ -0.49
CSDE1-217ENST00000534699 DDX41Q9UJV9 622 aaKnown RBP12.02□□□□□ -0.49
CSDE1-217ENST00000534699 NID2Q14112 1375 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 PRC1O43663 620 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 EFCAB14O75071 495 aa12.02□□□□□ -0.49
CSDE1-217ENST00000534699 PPFIA4O75335 1185 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms