RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MICAL1Q8TDZ2 1067 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 ALG3Q92685 438 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 ZNF669Q96BR6 464 aaPredicted RBP4.32□□□□□ -1.72
CD44-238ENST00000534296 AARSD1Q9BTE6 412 aaKnown RBP4.32□□□□□ -1.72
CD44-238ENST00000534296 RNF38Q9H0F5 515 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 KCNK12Q9HB15 430 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 BTG4Q9NY30 223 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 MARCH2Q9P0N8 246 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 KCTD3Q9Y597 815 aa4.32□□□□□ -1.72
CD44-238ENST00000534296 TIMM13Q9Y5L4 95 aaPredicted RBP4.32□□□□□ -1.72
CD44-238ENST00000534296 CEBPAP49715 358 aaPredicted RBP4.31□□□□□ -1.72
CD44-238ENST00000534296 GFRA1P56159 465 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 PPP2R2AP63151 447 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 ZNF200P98182 395 aaPredicted RBP4.31□□□□□ -1.72
CD44-238ENST00000534296 MAP4K2Q12851 820 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 MTERF2Q49AM1 385 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 MROH9Q5TGP6 573 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 LDHDQ86WU2 507 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 SIAH1Q8IUQ4 282 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 NPLOC4Q8TAT6 608 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 FRS2Q8WU20 508 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 TSPAN17Q96FV3 270 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 CHAMP1Q96JM3 812 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 SGPP1Q9BX95 441 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 CNTD2Q9H8S5 307 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 SIRPGQ9P1W8 387 aa4.31□□□□□ -1.72
CD44-238ENST00000534296 TRAV20A0A0B4J274 112 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 A0A1W2PQU0 124 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 ZC3H12DA2A288 527 aaKnown RBP4.3□□□□□ -1.72
CD44-238ENST00000534296 CCDC85CA6NKD9 419 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 C22orf46C9J442 243 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 PDPK1O15530 556 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 BUB1BO60566 1050 aaPredicted RBP4.3□□□□□ -1.72
CD44-238ENST00000534296 KRT1P04264 644 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 ZSCAN22P10073 491 aaPredicted RBP4.3□□□□□ -1.72
CD44-238ENST00000534296 NCAM1P13591 858 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 PI3P19957 117 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 CFPP27918 469 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 CDR1P51861 262 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 PRR5P85299 388 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 SEC14L1Q92503 715 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 DDX11Q96FC9 970 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 TRMT2BQ96GJ1 504 aaKnown RBP4.3□□□□□ -1.72
CD44-238ENST00000534296 TMEM169Q96HH4 297 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 YIPF4Q9BSR8 244 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 MTA3Q9BTC8 594 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 IER2Q9BTL4 223 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 LGR4Q9BXB1 951 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 IRF2BPLQ9H1B7 796 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 GCM1Q9NP62 436 aa4.3□□□□□ -1.72
CD44-238ENST00000534296 H7BY64 318 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 TBX1O43435 398 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 MAFKO60675 156 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 NTRK1P04629 796 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 AFF3P51826 1226 aaKnown RBP4.29□□□□□ -1.72
CD44-238ENST00000534296 EPHB3P54753 998 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 RASGRF1Q13972 1273 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 TESK1Q15569 626 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 CNKSR3Q6P9H4 555 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 CEP68Q76N32 757 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 ZC3H18Q86VM9 953 aaKnown RBP4.29□□□□□ -1.72
CD44-238ENST00000534296 RIOX2Q8IUF8 465 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 TMEM145Q8NBT3 493 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 CDC6Q99741 560 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 CCDC113Q9H0I3 377 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 PCDH18Q9HCL0 1135 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 NUB1Q9Y5A7 615 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 PCDHA2Q9Y5H9 948 aa4.29□□□□□ -1.72
CD44-238ENST00000534296 IRS4O14654 1257 aaPredicted RBP4.28□□□□□ -1.72
CD44-238ENST00000534296 PRODHO43272 600 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 DGKIO75912 1065 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 FGFR1P11362 822 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 SLC6A11P48066 632 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 SSRP1Q08945 709 aaKnown RBP4.28□□□□□ -1.72
CD44-238ENST00000534296 LSAMPQ13449 338 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 PRSS53Q2L4Q9 553 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 MBLAC2Q68D91 279 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 RSPO2Q6UXX9 243 aaPredicted RBP4.28□□□□□ -1.72
CD44-238ENST00000534296 NSMFQ6X4W1 530 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 USP53Q70EK8 1073 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 LRP10Q7Z4F1 713 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 TEX2Q8IWB9 1127 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 SREK1Q8WXA9 508 aaKnown RBP4.28□□□□□ -1.72
CD44-238ENST00000534296 ZFYVE21Q9BQ24 234 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 EPB41L1Q9H4G0 881 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 NGRNQ9NPE2 291 aaKnown RBP4.28□□□□□ -1.72
CD44-238ENST00000534296 CLDND1Q9NY35 253 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 PCDHA5Q9Y5H7 936 aa4.28□□□□□ -1.72
CD44-238ENST00000534296 KRIT1O00522 736 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 PABPC1P11940 636 aaKnown RBP4.27□□□□□ -1.73
CD44-238ENST00000534296 NAT1P18440 290 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 BCL6P41182 706 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 NCKAP1LP55160 1127 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 SSPNQ14714 243 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 INF2Q27J81 1249 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 KIZQ2M2Z5 673 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 ZC3H12BQ5HYM0 836 aaKnown RBP4.27□□□□□ -1.73
CD44-238ENST00000534296 SLC35F1Q5T1Q4 408 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 LCE1DQ5T752 114 aa4.27□□□□□ -1.73
CD44-238ENST00000534296 ETV3LQ6ZN32 361 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms