RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MEIS2O14770 477 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 PRPF3O43395 683 aaKnown RBP22.9■■□□□ 1.26
CPSF1-209ENST00000532725 PGK1P00558 417 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 TNFAIP2Q03169 654 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 WWC2Q6AWC2 1192 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 HEATR3Q7Z4Q2 680 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 GPKOWQ92917 476 aaPredicted RBP eCLIP22.9■■□□□ 1.26
CPSF1-209ENST00000532725 PSTPIP2Q9H939 334 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 GNEQ9Y223 722 aaKnown RBP22.9■■□□□ 1.26
CPSF1-209ENST00000532725 ADAMTS4O75173 837 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 NR3C2P08235 984 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 IFNAR1P17181 557 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 SMPD1P17405 629 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 EIF2AK2P19525 551 aaKnown RBP22.89■■□□□ 1.25
CPSF1-209ENST00000532725 NEK4P51957 841 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 TMEM63BQ5T3F8 832 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 USP17L6PQ6QN14 398 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 FCHSD1Q86WN1 690 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 KIF2CQ99661 725 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 C11orf49Q9H6J7 331 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 TPCN1Q9ULQ1 816 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 PDE4DIPQ5VU43 2346 aa22.89■■□□□ 1.25
CPSF1-209ENST00000532725 AK2P54819 239 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 NKX3-2P78367 333 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 ANKRD1Q15327 319 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 STXBP2Q15833 593 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 PKN1Q16512 942 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 PFKFB3Q16875 520 aaPredicted RBP22.88■■□□□ 1.25
CPSF1-209ENST00000532725 TYW1BQ6NUM6 668 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 VSIG10LQ86VR7 867 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 KLHDC9Q8NEP7 349 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 PDCD2LQ9BRP1 358 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 C22orf23Q9BZE7 217 aa22.88■■□□□ 1.25
CPSF1-209ENST00000532725 SYNRGQ9UMZ2 1314 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 RBM25P49756 843 aaKnown RBP22.87■■□□□ 1.25
CPSF1-209ENST00000532725 GJA9P57773 515 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 RNF180Q86T96 592 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 PHKBQ93100 1093 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 WDR11Q9BZH6 1224 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 UPF3AQ9H1J1 476 aaKnown RBP22.87■■□□□ 1.25
CPSF1-209ENST00000532725 BARHL2Q9NY43 387 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 Q9Y3F1 56 aa22.87■■□□□ 1.25
CPSF1-209ENST00000532725 hCG_1984214I3L0E3 225 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 STXBP3O00186 592 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 CTAGE5O15320 804 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 EIF3JO75822 258 aaKnown RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 MYCNP04198 464 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 IRX5P78411 483 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 STK3Q13188 491 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 PGM5Q15124 567 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 DUSP28Q4G0W2 176 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 CCSAPQ6IQ19 270 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 ZNF713Q8N859 430 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 SMARCC2Q8TAQ2 1214 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 CUL5Q93034 780 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 HTATIP2Q9BUP3 242 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 RNF26Q9BY78 433 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 SENP6Q9GZR1 1112 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 RBM27Q9P2N5 1060 aaKnown RBP22.86■■□□□ 1.25
CPSF1-209ENST00000532725 FRMPD3Q5JV73 1810 aa22.86■■□□□ 1.25
CPSF1-209ENST00000532725 KBTBD13C9JR72 458 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 PFKFB2O60825 505 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 PPFIA3O75145 1194 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 SCG2P13521 617 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 PTGS1P23219 599 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 NOL8Q76FK4 1167 aaKnown RBP22.85■■□□□ 1.25
CPSF1-209ENST00000532725 SCFD2Q8WU76 684 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 TSEN34Q9BSV6 310 aaKnown RBP22.85■■□□□ 1.25
CPSF1-209ENST00000532725 PHF24Q9UPV7 400 aa22.85■■□□□ 1.25
CPSF1-209ENST00000532725 FRMPD4Q14CM0 1322 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 MYADML2A6NDP7 307 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 DYNC1LI2O43237 492 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-209ENST00000532725 CST5P28325 142 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-209ENST00000532725 NAPAP54920 295 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 SCRN1Q12765 414 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 PPP1R18Q6NYC8 613 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 CCDC62Q6P9F0 684 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 IL31RAQ8NI17 732 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 SLC26A6Q9BXS9 759 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 SLKQ9H2G2 1235 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-209ENST00000532725 SPC25Q9HBM1 224 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 RIC8AQ9NPQ8 531 aa22.84■■□□□ 1.25
CPSF1-209ENST00000532725 SMCO2A6NFE2 343 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 RGS20O76081 388 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 ARIH2O95376 493 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 C6orf222P0C671 652 aaPredicted RBP22.83■■□□□ 1.25
CPSF1-209ENST00000532725 MYCLP12524 364 aaPredicted RBP22.83■■□□□ 1.25
CPSF1-209ENST00000532725 AKAP17AQ02040 695 aaKnown RBP22.83■■□□□ 1.25
CPSF1-209ENST00000532725 KCNA10Q16322 511 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 UBE2SQ16763 222 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 SEPT14Q6ZU15 432 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 TEX2Q8IWB9 1127 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 DPF3Q92784 378 aa22.83■■□□□ 1.25
CPSF1-209ENST00000532725 LRRC37A2A6NM11 1700 aa22.82■■□□□ 1.24
CPSF1-209ENST00000532725 CPLX1O14810 134 aa22.82■■□□□ 1.24
CPSF1-209ENST00000532725 TXNP10599 105 aaKnown RBP22.82■■□□□ 1.24
CPSF1-209ENST00000532725 MRPS9P82933 396 aaKnown RBP22.82■■□□□ 1.24
CPSF1-209ENST00000532725 SSRP1Q08945 709 aaKnown RBP22.82■■□□□ 1.24
CPSF1-209ENST00000532725 TTLL4Q14679 1199 aa22.82■■□□□ 1.24
CPSF1-209ENST00000532725 ME3Q16798 604 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms