RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 TMX1Q9H3N1 280 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 FAM237AA0A1B0GTK4 181 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 SNAP25P60880 206 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 EVX2Q03828 476 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 DPYDQ12882 1025 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 TEKT3Q9BXF9 490 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 VPS33BQ9H267 617 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 LZTFL1Q9NQ48 299 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 ZBTB21Q9ULJ3 1066 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 DDTLA6NHG4 134 aaPredicted RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 POTEMA6NI47 508 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 RRP9O43818 475 aaKnown RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 ERLIN1O75477 346 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 EPB41P11171 864 aaKnown RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 TGFB2P61812 414 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 KCNB1Q14721 858 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 SUPT20HL1Q3ZLR7 823 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 OR8K1Q8NGG5 319 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 FAM20AQ96MK3 541 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 THAP9Q9H5L6 903 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 CGNQ9P2M7 1197 aaKnown RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 GDAQ9Y2T3 454 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 PVALEFA0A1B0GWK0 134 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 ENOX2Q16206 610 aaKnown RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 NELFCDQ8IXH7 590 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 MRPL44Q9H9J2 332 aaKnown RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 COL4A3BPQ9Y5P4 624 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 HOXA13P31271 388 aaPredicted RBP12.35□□□□□ -0.43
TRIM3-211ENST00000532542 KIF5AQ12840 1032 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 USP37Q86T82 979 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 TMEM60Q9H2L4 133 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 CCDC172P0C7W6 258 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 UNC13DQ70J99 1090 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 MIER3Q7Z3K6 550 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 MYCT1Q8N699 235 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 PSMD1Q99460 953 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 TUBGCP2Q9BSJ2 902 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 SEPT11Q9NVA2 429 aaKnown RBP12.35□□□□□ -0.43
TRIM3-211ENST00000532542 MKRN1Q9UHC7 482 aaKnown RBP12.35□□□□□ -0.43
TRIM3-211ENST00000532542 CSADQ9Y600 493 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 GLI3P10071 1580 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 MYH14Q7Z406 1995 aaKnown RBP12.35□□□□□ -0.43
TRIM3-211ENST00000532542 ZBTB22O15209 634 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 MATR3P43243 847 aaKnown RBP eCLIP12.35□□□□□ -0.43
TRIM3-211ENST00000532542 CYP4A11Q02928 519 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 CCDC144BQ3MJ40 725 aa12.35□□□□□ -0.43
TRIM3-211ENST00000532542 EARS2Q5JPH6 523 aaKnown RBP12.35□□□□□ -0.43
TRIM3-211ENST00000532542 CTAGE9A4FU28 777 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 DDX39AO00148 427 aaKnown RBP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 RIOK3O14730 519 aaKnown RBP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 CYTH3O43739 400 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 MMP14P50281 582 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 GCNT3O95395 438 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 PLA2G4BP0C869 781 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 RPS12P25398 132 aaKnown RBP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 PRKG1Q13976 671 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 TBC1D10BQ4KMP7 808 aaPredicted RBP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 TEX35Q5T0J7 233 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 CNOT6LQ96LI5 555 aaKnown RBP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 ZNF577Q9BSK1 485 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 KCNQ5Q9NR82 932 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 FRMD4BQ9Y2L6 1034 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 ABCB11O95342 1321 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 NPM3O75607 178 aaKnown RBP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 PRCPP42785 496 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 RASA3Q14644 834 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 NLRX1Q86UT6 975 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 CCDC125Q86Z20 511 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 TAF4BQ92750 862 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 C4BP0C0L5 1744 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 SHANK3Q9BYB0 1731 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 COBLO75128 1261 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 PABPC4Q13310 644 aaKnown RBP eCLIP12.34□□□□□ -0.43
TRIM3-211ENST00000532542 TCP11X2Q5H9J9 407 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 ARHGEF16Q5VV41 709 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 SULF1Q8IWU6 871 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 NKX2-3Q8TAU0 364 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 RAD54LQ92698 747 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 PDCL3Q9H2J4 239 aa12.34□□□□□ -0.43
TRIM3-211ENST00000532542 TCHHQ07283 1943 aa12.33□□□□□ -0.43
TRIM3-211ENST00000532542 BACH1O14867 736 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 PRPF38AQ8NAV1 312 aaKnown RBP12.33□□□□□ -0.44
TRIM3-211ENST00000532542 SLF1Q9BQI6 1058 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 NRAPQ86VF7 1730 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 FKBP3Q00688 224 aaKnown RBP12.33□□□□□ -0.44
TRIM3-211ENST00000532542 LRRC63Q05C16 580 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 KRT31Q15323 416 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 DCAF17Q5H9S7 520 aaPredicted RBP12.33□□□□□ -0.44
TRIM3-211ENST00000532542 ZNF569Q5MCW4 686 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 DCPSQ96C86 337 aaKnown RBP12.33□□□□□ -0.44
TRIM3-211ENST00000532542 GMCL1Q96IK5 515 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 VCPKMTQ9H867 229 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 PPP2R2CQ9Y2T4 447 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 TMCO3Q6UWJ1 677 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 RETREG2Q8NC44 543 aa12.33□□□□□ -0.44
TRIM3-211ENST00000532542 DDX12PQ92771 950 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms