RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MSRAQ9UJ68 235 aa17.19■□□□□ 0.34
VPS28-215ENST00000531924 EDNRBP24530 442 aa17.18■□□□□ 0.34
VPS28-215ENST00000531924 PURAQ00577 322 aaKnown RBP17.18■□□□□ 0.34
VPS28-215ENST00000531924 RMDN3Q96TC7 470 aa17.18■□□□□ 0.34
VPS28-215ENST00000531924 NOD1Q9Y239 953 aa17.18■□□□□ 0.34
VPS28-215ENST00000531924 UMODL1Q5DID0 1318 aa17.18■□□□□ 0.34
VPS28-215ENST00000531924 ERICH2A1L162 156 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 GRXCR1A8MXD5 290 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 GRIN2CQ14957 1233 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 RAB30Q15771 203 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 STXBP2Q15833 593 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 QRICH1Q2TAL8 776 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 TTC22Q5TAA0 569 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 ARHGEF16Q5VV41 709 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 SEPT14Q6ZU15 432 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 OTOP2Q7RTS6 562 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 SYTL5Q8TDW5 730 aaPredicted RBP17.17■□□□□ 0.34
VPS28-215ENST00000531924 HERVK_113Q902F9 699 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 IWS1Q96ST2 819 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 JMJD4Q9H9V9 463 aa17.17■□□□□ 0.34
VPS28-215ENST00000531924 TRMT13Q9NUP7 481 aaKnown RBP17.17■□□□□ 0.34
VPS28-215ENST00000531924 U3KPZ7 1027 aaPredicted RBP17.17■□□□□ 0.34
VPS28-215ENST00000531924 LRRC37A2A6NM11 1700 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 ZBBXA8MT70 800 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 CYP2C9P11712 490 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 NBPF20Q3BBV1 942 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 RASIP1Q5U651 963 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 RALYLQ86SE5 291 aaKnown RBP17.16■□□□□ 0.34
VPS28-215ENST00000531924 RETREG2Q8NC44 543 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 TBC1D5Q92609 795 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 COPS5Q92905 334 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 TAAR1Q96RJ0 339 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 GAS2L1Q99501 681 aaPredicted RBP17.16■□□□□ 0.34
VPS28-215ENST00000531924 AMNQ9BXJ7 453 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 PBX4Q9BYU1 374 aa17.16■□□□□ 0.34
VPS28-215ENST00000531924 A6NJR5 290 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 KLRF2D3W0D1 207 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 CFBP00751 764 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 GH1P01241 217 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 PBX2P40425 430 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 TRAF1Q13077 416 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 SART3Q15020 963 aaKnown RBP17.15■□□□□ 0.34
VPS28-215ENST00000531924 NFRKBQ6P4R8 1299 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 CHST3Q7LGC8 479 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 SCLYQ96I15 445 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 WNT8AQ9H1J5 351 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 SLC4A7Q9Y6M7 1214 aa17.15■□□□□ 0.34
VPS28-215ENST00000531924 IFIT3O14879 490 aaKnown RBP17.14■□□□□ 0.33
VPS28-215ENST00000531924 PFKMP08237 780 aa17.14■□□□□ 0.33
VPS28-215ENST00000531924 EIF2AK2P19525 551 aaKnown RBP17.14■□□□□ 0.33
VPS28-215ENST00000531924 PDE4AP27815 886 aa17.14■□□□□ 0.33
VPS28-215ENST00000531924 PTPN11Q06124 597 aaPredicted RBP17.14■□□□□ 0.33
VPS28-215ENST00000531924 AFG1LQ8WV93 481 aa17.14■□□□□ 0.33
VPS28-215ENST00000531924 SLC28A3Q9HAS3 691 aa17.14■□□□□ 0.33
VPS28-215ENST00000531924 CXXC1Q9P0U4 656 aaPredicted RBP17.14■□□□□ 0.33
VPS28-215ENST00000531924 EIF3JO75822 258 aaKnown RBP17.13■□□□□ 0.33
VPS28-215ENST00000531924 ACTN1P12814 892 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 GSPT1P15170 499 aaKnown RBP17.13■□□□□ 0.33
VPS28-215ENST00000531924 CASTP20810 708 aaKnown RBP17.13■□□□□ 0.33
VPS28-215ENST00000531924 BFSP2Q13515 415 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 LY6KQ17RY6 165 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 CYB5R4Q7L1T6 521 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 DEFB128Q7Z7B8 93 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 HOMER1Q86YM7 354 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 STAG2Q8N3U4 1231 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 COL20A1Q9P218 1284 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 PCDHA1Q9Y5I3 950 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 MRVI1Q9Y6F6 885 aa17.13■□□□□ 0.33
VPS28-215ENST00000531924 ZBTB5O15062 677 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 ARIH2O95376 493 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 CHMLP26374 656 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 RFC2P35250 354 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 IRX6P78412 446 aaPredicted RBP17.12■□□□□ 0.33
VPS28-215ENST00000531924 SEC23AQ15436 765 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 CCDC62Q6P9F0 684 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 CCDC155Q8N6L0 562 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 PPP1R13LQ8WUF5 828 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 COL25A1Q9BXS0 654 aaPredicted RBP17.12■□□□□ 0.33
VPS28-215ENST00000531924 FTOQ9C0B1 505 aaKnown RBP eCLIP17.12■□□□□ 0.331e-6■■□□□ 11.8
VPS28-215ENST00000531924 IL25Q9H293 177 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 PRDM12Q9H4Q4 367 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 PXMP2Q9NR77 195 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 LAMA4Q16363 1823 aa17.12■□□□□ 0.33
VPS28-215ENST00000531924 LCTP09848 1927 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 NR3C2P08235 984 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 MMP3P08254 477 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 MYCLP12524 364 aaPredicted RBP17.11■□□□□ 0.33
VPS28-215ENST00000531924 WTAPQ15007 396 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 DGKDQ16760 1214 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 CATIPQ7Z7H3 387 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 NCOA7Q8NI08 942 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 PPM1EQ8WY54 764 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 NKX2-4Q9H2Z4 354 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 MAP3K20Q9NYL2 800 aaKnown RBP17.11■□□□□ 0.33
VPS28-215ENST00000531924 MAD2L2Q9UI95 211 aa17.11■□□□□ 0.33
VPS28-215ENST00000531924 UNC80Q8N2C7 3258 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 PALM3A6NDB9 673 aaPredicted RBP17.1■□□□□ 0.33
VPS28-215ENST00000531924 PITPNM1O00562 1244 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 CYP21A2P08686 494 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 ATP2A2P16615 1042 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms