RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 RAP1GAPP47736 663 aa10.62□□□□□ -0.71
CSDE1-213ENST00000530784 YBX1P67809 324 aaKnown RBP10.62□□□□□ -0.71
CSDE1-213ENST00000530784 SLC10A6Q3KNW5 377 aa10.62□□□□□ -0.71
CSDE1-213ENST00000530784 NLGN2Q8NFZ4 835 aa10.62□□□□□ -0.71
CSDE1-213ENST00000530784 KLHL14Q9P2G3 628 aa10.62□□□□□ -0.71
CSDE1-213ENST00000530784 KIF21BO75037 1637 aa10.62□□□□□ -0.71
CSDE1-213ENST00000530784 NUDT19A8MXV4 375 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 NFIBO00712 420 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 THBDP07204 575 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 PLS3P13797 630 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 TACR1P25103 407 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 RAB3GAP1Q15042 981 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 TMEM132EQ6IEE7 984 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 SGPP1Q9BX95 441 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 PHLDB1Q86UU1 1377 aa10.61□□□□□ -0.71
CSDE1-213ENST00000530784 NUP153P49790 1475 aaKnown RBP10.61□□□□□ -0.71
CSDE1-213ENST00000530784 FHOD3Q2V2M9 1422 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 TEX51A0A1B0GUA7 166 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 A0A1W2PQJ5 194 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 VIPR1P32241 457 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 CORO7P57737 925 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 SRSF3P84103 164 aaKnown RBP10.6□□□□□ -0.71
CSDE1-213ENST00000530784 BICRALQ6AI39 1079 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 ATG14Q6ZNE5 492 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 CKAP2LQ8IYA6 745 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 TRIM55Q9BYV6 548 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 EPN3Q9H201 632 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 PPP1R1BQ9UD71 204 aaPredicted RBP10.6□□□□□ -0.71
CSDE1-213ENST00000530784 NEO1Q92859 1461 aa10.6□□□□□ -0.71
CSDE1-213ENST00000530784 TRBV23OR9-2A0A075B6M9 112 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 HRKO00198 91 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 PPP1R11O60927 126 aaPredicted RBP10.59□□□□□ -0.71
CSDE1-213ENST00000530784 MED14OSP0DP75 135 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 GLDCP23378 1020 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 RANGAP1P46060 587 aaPredicted RBP10.59□□□□□ -0.71
CSDE1-213ENST00000530784 DLG4P78352 724 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 SF1Q15637 639 aaKnown RBP10.59□□□□□ -0.71
CSDE1-213ENST00000530784 MBLAC2Q68D91 279 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 FRS2Q8WU20 508 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 GCM1Q9NP62 436 aa10.59□□□□□ -0.71
CSDE1-213ENST00000530784 SEMA7AO75326 666 aa10.58□□□□□ -0.72
CSDE1-213ENST00000530784 HOXC12P31275 282 aa10.58□□□□□ -0.72
CSDE1-213ENST00000530784 GTF2F1P35269 517 aaKnown RBP eCLIP10.58□□□□□ -0.72
CSDE1-213ENST00000530784 RPTNQ6XPR3 784 aa10.58□□□□□ -0.72
CSDE1-213ENST00000530784 NPLOC4Q8TAT6 608 aa10.58□□□□□ -0.72
CSDE1-213ENST00000530784 GULP1Q9UBP9 304 aa10.58□□□□□ -0.72
CSDE1-213ENST00000530784 RWDD3Q9Y3V2 267 aa10.58□□□□□ -0.72
CSDE1-213ENST00000530784 C7orf72A4D263 438 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 DBX1A6NMT0 343 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 ABLIM1O14639 778 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 SNRPB2P08579 225 aaKnown RBP10.57□□□□□ -0.72
CSDE1-213ENST00000530784 DBHP09172 617 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 ECI1P42126 302 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 CBX2Q14781 532 aaPredicted RBP10.57□□□□□ -0.72
CSDE1-213ENST00000530784 LCE3BQ5TA77 95 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 MMP19Q99542 508 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 SIRT5Q9NXA8 310 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 FBLN5Q9UBX5 448 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 MBD1Q9UIS9 605 aaPredicted RBP10.57□□□□□ -0.72
CSDE1-213ENST00000530784 EFCAB5A4FU69 1503 aa10.57□□□□□ -0.72
CSDE1-213ENST00000530784 A0A1W2PQU0 124 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 TCAF2A6NFQ2 919 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 AGRPO00253 132 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 CAPNS1P04632 268 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 GRIA2P42262 883 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 PRSS53Q2L4Q9 553 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 ANKLE2Q86XL3 938 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 CILP2Q8IUL8 1156 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 LZTR1Q8N653 840 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 CNTD2Q9H8S5 307 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 CD320Q9NPF0 282 aa10.56□□□□□ -0.72
CSDE1-213ENST00000530784 SMG5Q9UPR3 1016 aaKnown RBP10.56□□□□□ -0.72
CSDE1-213ENST00000530784 ARNTLO00327 626 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 NPHS1O60500 1241 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 RAPGEF3O95398 923 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 SCG5P05408 212 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 PPP2R2AP63151 447 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 TMEM62Q0P6H9 643 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 NR1I3Q14994 352 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 INF2Q27J81 1249 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 OLFML2BQ68BL8 750 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 TMC6Q7Z403 805 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 KREMEN2Q8NCW0 462 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 CCDC140Q96MF4 163 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 MTA3Q9BTC8 594 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 TMEFF2Q9UIK5 374 aaPredicted RBP10.55□□□□□ -0.72
CSDE1-213ENST00000530784 FRMPD1Q5SYB0 1578 aa10.55□□□□□ -0.72
CSDE1-213ENST00000530784 PLEKHD1A6NEE1 506 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 NPIPB6E9PJ23 425 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 SRGAP3O43295 1099 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 CYBBP04839 570 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 KCNJ6P48051 423 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 GFRA1P56159 465 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 PLEKHN1Q494U1 663 aaPredicted RBP10.54□□□□□ -0.72
CSDE1-213ENST00000530784 PAQR3Q6TCH7 311 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 DPF3Q92784 378 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 HCFC2Q9Y5Z7 792 aa10.54□□□□□ -0.72
CSDE1-213ENST00000530784 U2SURPO15042 1029 aaKnown RBP10.53□□□□□ -0.72
CSDE1-213ENST00000530784 GLI4P10075 376 aa10.53□□□□□ -0.72
CSDE1-213ENST00000530784 MAPKAPK2P49137 400 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms