RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ADCY3O60266 1144 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 PABPC1P11940 636 aaKnown RBP7.22□□□□□ -1.25
CD44-223ENST00000526553 RANGAP1P46060 587 aaPredicted RBP7.22□□□□□ -1.25
CD44-223ENST00000526553 WWC2Q6AWC2 1192 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 TMEM132EQ6IEE7 984 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 ZC3H14Q6PJT7 736 aaKnown RBP7.22□□□□□ -1.25
CD44-223ENST00000526553 TMC6Q7Z403 805 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 PLEKHO2Q8TD55 490 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 KCNN1Q92952 543 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 OSBP2Q969R2 916 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 SRPK1Q96SB4 655 aaKnown RBP7.22□□□□□ -1.25
CD44-223ENST00000526553 GCM1Q9NP62 436 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 SIRT5Q9NXA8 310 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 PFDN2Q9UHV9 154 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 MBD1Q9UIS9 605 aaPredicted RBP7.22□□□□□ -1.25
CD44-223ENST00000526553 DIAPH1O60610 1272 aaKnown RBP7.21□□□□□ -1.26
CD44-223ENST00000526553 YBX3P16989 372 aaKnown RBP eCLIP7.21□□□□□ -1.26
CD44-223ENST00000526553 RAP1GAPP47736 663 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 DLG4P78352 724 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 ZNF124Q15973 351 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 LONRF2Q1L5Z9 754 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 RSPO2Q6UXX9 243 aaPredicted RBP7.21□□□□□ -1.26
CD44-223ENST00000526553 NSMFQ6X4W1 530 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 KRTAP19-1Q8IUB9 90 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 ZBTB38Q8NAP3 1195 aaPredicted RBP7.21□□□□□ -1.26
CD44-223ENST00000526553 RCBTB1Q8NDN9 531 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 CD320Q9NPF0 282 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 MARCH2Q9P0N8 246 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 NUDT5Q9UKK9 219 aa7.21□□□□□ -1.26
CD44-223ENST00000526553 TCAF2A6NFQ2 919 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.2□□□□□ -1.26
CD44-223ENST00000526553 FUCA1P04066 466 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 C1QTNF9P0C862 333 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 YOD1Q5VVQ6 348 aaPredicted RBP7.2□□□□□ -1.26
CD44-223ENST00000526553 ATG14Q6ZNE5 492 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 NLRP10Q86W26 655 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 USP33Q8TEY7 942 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 PEX11GQ96HA9 241 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 CNTD2Q9H8S5 307 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 GPR27Q9NS67 375 aa7.2□□□□□ -1.26
CD44-223ENST00000526553 ZC3H12DA2A288 527 aaKnown RBP7.19□□□□□ -1.26
CD44-223ENST00000526553 F8W031 263 aaPredicted RBP7.19□□□□□ -1.26
CD44-223ENST00000526553 LCP1P13796 627 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 BCL6P41182 706 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 NFE2L2Q16236 605 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 MROH9Q5TGP6 573 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 USP53Q70EK8 1073 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 DCP2Q8IU60 420 aaKnown RBP7.19□□□□□ -1.26
CD44-223ENST00000526553 RIOX2Q8IUF8 465 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 TEX2Q8IWB9 1127 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 DCAF4Q8WV16 495 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 TSPAN17Q96FV3 270 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 X6R8D5 127 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 KDM2BQ8NHM5 1336 aa7.19□□□□□ -1.26
CD44-223ENST00000526553 C22orf46C9J442 243 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 H7BY64 318 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 N4BP3O15049 544 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 NTRK1P04629 796 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 CDR1P51861 262 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 PRR5P85299 388 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 LSAMPQ13449 338 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 NTRK3Q16288 839 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 ZC3H12BQ5HYM0 836 aaKnown RBP7.18□□□□□ -1.26
CD44-223ENST00000526553 DPH6Q7L8W6 267 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 SCUBE1Q8IWY4 988 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 JMYQ8N9B5 988 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 ZFYVE21Q9BQ24 234 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 PHF20Q9BVI0 1012 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 SGPP1Q9BX95 441 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 BTG4Q9NY30 223 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 FBXL7Q9UJT9 491 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 DBR1Q9UK59 544 aaKnown RBP7.18□□□□□ -1.26
CD44-223ENST00000526553 PCDHA2Q9Y5H9 948 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 HCFC2Q9Y5Z7 792 aa7.18□□□□□ -1.26
CD44-223ENST00000526553 KRTAP9-6A0A140TA67 174 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 DBX1A6NMT0 343 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 ZBTB7AO95365 584 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 FAM153BP0C7A2 387 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 FPR2P25090 351 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 SLC6A11P48066 632 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 SUMO1P63165 101 aaKnown RBP7.17□□□□□ -1.26
CD44-223ENST00000526553 ZNF200P98182 395 aaPredicted RBP7.17□□□□□ -1.26
CD44-223ENST00000526553 SLC9A5Q14940 896 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 KCNA10Q16322 511 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 STYK1Q6J9G0 422 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 CEP68Q76N32 757 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 LDHDQ86WU2 507 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 ANKLE2Q86XL3 938 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 CILP2Q8IUL8 1156 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 MZB1Q8WU39 189 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 TRMT2BQ96GJ1 504 aaKnown RBP7.17□□□□□ -1.26
CD44-223ENST00000526553 TMEM169Q96HH4 297 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 DNAJC7Q99615 494 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 CDC6Q99741 560 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 SMG5Q9UPR3 1016 aaKnown RBP7.17□□□□□ -1.26
CD44-223ENST00000526553 CDK11AQ9UQ88 783 aaPredicted RBP7.17□□□□□ -1.26
CD44-223ENST00000526553 IRS2Q9Y4H2 1338 aa7.17□□□□□ -1.26
CD44-223ENST00000526553 TRBV23-1A0A0A0MS06 115 aa7.16□□□□□ -1.26
CD44-223ENST00000526553 FBLN1P23142 703 aa7.16□□□□□ -1.26
CD44-223ENST00000526553 EPHB3P54753 998 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms