RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 PDE4BQ07343 736 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 TCTN1Q2MV58 587 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 RCSD1Q6JBY9 416 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 IFNL3Q8IZI9 196 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 APPBP2Q92624 585 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 ANKS1AQ92625 1134 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 SEC62Q99442 399 aaKnown RBP13.78□□□□□ -0.2
SDCBP-211ENST00000523441 RAD50Q92878 1312 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 PIEZO1Q92508 2521 aa13.78□□□□□ -0.2
SDCBP-211ENST00000523441 LINC01553A4QN01 128 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 TSPY2A6NKD2 308 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 PITPNM1O00562 1244 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 RNF113AO15541 343 aaKnown RBP13.77□□□□□ -0.21
SDCBP-211ENST00000523441 BAIAP3O94812 1187 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 SLC3A2P08195 630 aaKnown RBP13.77□□□□□ -0.21
SDCBP-211ENST00000523441 TXNP10599 105 aaKnown RBP13.77□□□□□ -0.21
SDCBP-211ENST00000523441 HNRNPUQ00839 825 aaKnown RBP eCLIP13.77□□□□□ -0.21
SDCBP-211ENST00000523441 GDF6Q6KF10 455 aaPredicted RBP13.77□□□□□ -0.21
SDCBP-211ENST00000523441 GIMAP6Q6P9H5 292 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 CCDC155Q8N6L0 562 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 GMCL1Q96IK5 515 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 TGS1Q96RS0 853 aaKnown RBP13.77□□□□□ -0.21
SDCBP-211ENST00000523441 C17orf80Q9BSJ5 609 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 LRRCC1Q9C099 1032 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 NAPBQ9H115 298 aa13.77□□□□□ -0.21
SDCBP-211ENST00000523441 PATL2C9JE40 543 aaKnown RBP13.76□□□□□ -0.21
SDCBP-211ENST00000523441 CSPG5O95196 566 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 ICAM1P05362 532 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 NHLH1Q02575 133 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 PPARAQ07869 468 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 NFRKBQ6P4R8 1299 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 LRRC8DQ7L1W4 858 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 KBTBD3Q8NAB2 608 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 FBXO22Q8NEZ5 403 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 FBXL18Q96ME1 805 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 ALG1Q9BT22 464 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 TOMM22Q9NS69 142 aa13.76□□□□□ -0.21
SDCBP-211ENST00000523441 MYH7BA7E2Y1 1941 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 SORBS3O60504 671 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 RANBP6O60518 1105 aaKnown RBP13.75□□□□□ -0.21
SDCBP-211ENST00000523441 ALADP13716 330 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 GNAT2P19087 354 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 CLUL1Q15846 466 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 LEXMQ3ZCV2 418 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 CNKSR3Q6P9H4 555 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 RNF207Q6ZRF8 634 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 SEPT14Q6ZU15 432 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 MORC4Q8TE76 937 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 AFG1LQ8WV93 481 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 NACAP1Q9BZK3 213 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 ECHDC1Q9NTX5 307 aa13.75□□□□□ -0.21
SDCBP-211ENST00000523441 NLRC5Q86WI3 1866 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 PLIN4Q96Q06 1357 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.74□□□□□ -0.21
SDCBP-211ENST00000523441 NBNO60934 754 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 ARIH2O95376 493 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 GJB5O95377 273 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 SELPP16109 830 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 ERVK-21P61565 698 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 GPNMBQ14956 572 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 USH1GQ495M9 461 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 RRP12Q5JTH9 1297 aaKnown RBP13.74□□□□□ -0.21
SDCBP-211ENST00000523441 SYDE2Q5VT97 1194 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.74□□□□□ -0.21
SDCBP-211ENST00000523441 AFAP1L1Q8TED9 768 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 SCFD2Q8WU76 684 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 DHX38Q92620 1227 aaKnown RBP13.74□□□□□ -0.21
SDCBP-211ENST00000523441 RAD9AQ99638 391 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 IL17RBQ9NRM6 502 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 SYNPO2Q9UMS6 1093 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 WDFY4Q6ZS81 3184 aa13.74□□□□□ -0.21
SDCBP-211ENST00000523441 RBM47A0AV96 593 aaKnown RBP13.73□□□□□ -0.21
SDCBP-211ENST00000523441 GRXCR2A6NFK2 248 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 A6NJR5 290 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 DCXO43602 365 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 KPNA6O60684 536 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 CKBP12277 381 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 PTPN11Q06124 597 aaPredicted RBP13.73□□□□□ -0.21
SDCBP-211ENST00000523441 LY6KQ17RY6 165 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 LRRFIP1Q32MZ4 808 aaKnown RBP13.73□□□□□ -0.21
SDCBP-211ENST00000523441 MYOCDQ8IZQ8 938 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 CAGE1Q8TC20 777 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 MPHOSPH6Q99547 160 aaKnown RBP13.73□□□□□ -0.21
SDCBP-211ENST00000523441 RANBP17Q9H2T7 1088 aaKnown RBP13.73□□□□□ -0.21
SDCBP-211ENST00000523441 LMCD1Q9NZU5 365 aa13.73□□□□□ -0.21
SDCBP-211ENST00000523441 NKRFO15226 690 aaKnown RBP eCLIP13.72□□□□□ -0.21
SDCBP-211ENST00000523441 UPP2O95045 317 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 MMP3P08254 477 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 RPS6P62753 249 aaKnown RBP13.72□□□□□ -0.21
SDCBP-211ENST00000523441 ZNF200P98182 395 aaPredicted RBP13.72□□□□□ -0.21
SDCBP-211ENST00000523441 IKBKEQ14164 716 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 C7orf31Q8N865 590 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 GPATCH3Q96I76 525 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 PHOX2BQ99453 314 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 ZBTB40Q9NUA8 1239 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 HDAC6Q9UBN7 1215 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 DDX19BQ9UMR2 479 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 KIAA1217Q5T5P2 1943 aa13.72□□□□□ -0.21
SDCBP-211ENST00000523441 MICAL3Q7RTP6 2002 aa13.71□□□□□ -0.21
SDCBP-211ENST00000523441 CCER2I3L3R5 266 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms