RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 INHAP05111 366 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 PDCP20941 246 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 GHRHRQ02643 423 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 TRIM32Q13049 653 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 OLFML2BQ68BL8 750 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 CCDC12Q8WUD4 166 aaPredicted RBP17.56■□□□□ 0.4
LSM1-203ENST00000520755 CUL5Q93034 780 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 TNFRSF25Q93038 417 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 PSTPIP2Q9H939 334 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 RIC8AQ9NPQ8 531 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 ASTN1O14525 1302 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 MEIS2O14770 477 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 MYCP01106 439 aaPredicted RBP17.55■□□□□ 0.4
LSM1-203ENST00000520755 XBP1P17861 261 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 CYP2C19P33261 490 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 CLK2P49760 499 aaKnown RBP17.55■□□□□ 0.4
LSM1-203ENST00000520755 ADCY7P51828 1080 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 NLRP5P59047 1200 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 TRIM29Q14134 588 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 UBE2SQ16763 222 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 MFSD14CQ5VZR4 134 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 USP17L6PQ6QN14 398 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 FCHSD1Q86WN1 690 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 DIS3L2Q8IYB7 885 aaKnown RBP17.55■□□□□ 0.4
LSM1-203ENST00000520755 RASGRP4Q8TDF6 673 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 TAAR1Q96RJ0 339 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 TINF2Q9BSI4 451 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 MAF1Q9H063 256 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 ADD3Q9UEY8 706 aaKnown RBP17.55■□□□□ 0.4
LSM1-203ENST00000520755 PCDHA4Q9UN74 947 aa17.55■□□□□ 0.4
LSM1-203ENST00000520755 DDX49Q9Y6V7 483 aaKnown RBP17.55■□□□□ 0.4
LSM1-203ENST00000520755 H3BQV1 296 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 BRD1O95696 1058 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 ALDH5A1P51649 535 aaPredicted RBP17.54■□□□□ 0.4
LSM1-203ENST00000520755 NR5A1Q13285 461 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 EARS2Q5JPH6 523 aaKnown RBP17.54■□□□□ 0.4
LSM1-203ENST00000520755 IFFO2Q5TF58 517 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 ZNF467Q7Z7K2 595 aaPredicted RBP17.54■□□□□ 0.4
LSM1-203ENST00000520755 TNS4Q8IZW8 715 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 BLIDQ8IZY5 108 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 SAMD3Q8N6K7 520 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 C6orf50Q9HD87 102 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 TMEM260Q9NX78 707 aa17.54■□□□□ 0.4
LSM1-203ENST00000520755 MAP3K20Q9NYL2 800 aaKnown RBP17.54■□□□□ 0.4
LSM1-203ENST00000520755 FAM205CA6NFA0 338 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 BTBD18B2RXH4 712 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 PIK3CDO00329 1044 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 PRKAR2AP13861 404 aaKnown RBP17.53■□□□□ 0.4
LSM1-203ENST00000520755 KRT2P35908 639 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 MRPL12P52815 198 aaKnown RBP17.53■□□□□ 0.4
LSM1-203ENST00000520755 UBXN2AP68543 259 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 RESTQ13127 1097 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 MAMDC4Q6UXC1 1216 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 ARMCX2Q7L311 632 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 DNERQ8NFT8 737 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 RMDN3Q96TC7 470 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 PCDHA6Q9UN73 950 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 PCDHA8Q9Y5H6 950 aa17.53■□□□□ 0.4
LSM1-203ENST00000520755 SYNGAP1Q96PV0 1343 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 ASB14A6NK59 587 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 ZSCAN22P10073 491 aaPredicted RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 EIF2AK2P19525 551 aaKnown RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 GNA11P29992 359 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 CACNB2Q08289 660 aaPredicted RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 ARHGEF16Q5VV41 709 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 GALNT17Q6IS24 598 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 FERMT3Q86UX7 667 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 REXO1Q8N1G1 1221 aaKnown RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 MSL3Q8N5Y2 521 aaKnown RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 NSUN6Q8TEA1 469 aaKnown RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 ARMC5Q96C12 935 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 PGBD1Q96JS3 809 aa17.52■□□□□ 0.4
LSM1-203ENST00000520755 MPHOSPH6Q99547 160 aaKnown RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 CIZ1Q9ULV3 898 aaPredicted RBP17.52■□□□□ 0.4
LSM1-203ENST00000520755 DOCK5Q9H7D0 1870 aa17.52■□□□□ 0.39
LSM1-203ENST00000520755 SNAI1O95863 264 aaPredicted RBP17.51■□□□□ 0.39
LSM1-203ENST00000520755 IGHA2P01877 340 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 U2AF2P26368 475 aaKnown RBP eCLIP17.51■□□□□ 0.392e-7■■■□□ 15.9
LSM1-203ENST00000520755 PDE4DQ08499 809 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 MTFR1Q15390 333 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 PRAMEF19Q5SWL8 479 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 FOXD4L5Q5VV16 416 aaPredicted RBP17.51■□□□□ 0.39
LSM1-203ENST00000520755 JAKMIP3Q5VZ66 844 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 FOXD4L4Q8WXT5 416 aaPredicted RBP17.51■□□□□ 0.39
LSM1-203ENST00000520755 ZNF333Q96JL9 665 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 GLT8D2Q9H1C3 349 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 FOXP1Q9H334 677 aaPredicted RBP17.51■□□□□ 0.39
LSM1-203ENST00000520755 PXMP2Q9NR77 195 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 CNPY2Q9Y2B0 182 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 FRMPD3Q5JV73 1810 aa17.51■□□□□ 0.39
LSM1-203ENST00000520755 FRMPD4Q14CM0 1322 aa17.5■□□□□ 0.39
LSM1-203ENST00000520755 SPDYE3A6NKU9 549 aa17.5■□□□□ 0.39
LSM1-203ENST00000520755 F13A1P00488 732 aa17.5■□□□□ 0.39
LSM1-203ENST00000520755 MAP3K21Q5TCX8 1036 aa17.5■□□□□ 0.39
LSM1-203ENST00000520755 BICD2Q8TD16 824 aa17.5■□□□□ 0.39
LSM1-203ENST00000520755 UNC93B1Q9H1C4 597 aa17.5■□□□□ 0.39
LSM1-203ENST00000520755 ZHX1Q9UKY1 873 aaPredicted RBP17.5■□□□□ 0.39
LSM1-203ENST00000520755 RPTORQ8N122 1335 aa17.49■□□□□ 0.39
LSM1-203ENST00000520755 B4DLN1 442 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms