RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 PTCRAQ6ISU1 281 aaPredicted RBP12.98□□□□□ -0.33
DDX41-216ENST00000513562 CNKSR3Q6P9H4 555 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 CHMP4CQ96CF2 233 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 UIMC1Q96RL1 719 aa12.98□□□□□ -0.33
DDX41-216ENST00000513562 PATL2C9JE40 543 aaKnown RBP12.97□□□□□ -0.33
DDX41-216ENST00000513562 CCER2I3L3R5 266 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 M0R2C6 588 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 RNF113AO15541 343 aaKnown RBP12.97□□□□□ -0.33
DDX41-216ENST00000513562 DCXO43602 365 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 PARNO95453 639 aaKnown RBP12.97□□□□□ -0.33
DDX41-216ENST00000513562 APPP05067 770 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 SELPP16109 830 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 EDNRBP24530 442 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 RBL2Q08999 1139 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 CSPP1Q1MSJ5 1256 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 PUS10Q3MIT2 529 aaKnown RBP12.97□□□□□ -0.33
DDX41-216ENST00000513562 LRRC8DQ7L1W4 858 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 SESTD1Q86VW0 696 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 IFNL3Q8IZI9 196 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 NEK9Q8TD19 979 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 SCFD2Q8WU76 684 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 SNX27Q96L92 541 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 FBXL18Q96ME1 805 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 STX8Q9UNK0 236 aa12.97□□□□□ -0.33
DDX41-216ENST00000513562 SCN5AQ14524 2016 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 SCN10AQ9Y5Y9 1956 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 ABHD14A-ACY1A0A1B0GW23 586 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 POTEB3A0JP26 581 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 PTPDC1A2A3K4 754 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 NBNO60934 754 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 ZFYP08048 801 aaPredicted RBP12.96□□□□□ -0.33
DDX41-216ENST00000513562 TCTN1Q2MV58 587 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 GDF6Q6KF10 455 aaPredicted RBP12.96□□□□□ -0.33
DDX41-216ENST00000513562 POTEBQ6S5H4 581 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 SLC30A10Q6XR72 485 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 DHX38Q92620 1227 aaKnown RBP12.96□□□□□ -0.33
DDX41-216ENST00000513562 COPS5Q92905 334 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 IL17RBQ9NRM6 502 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 ECHDC1Q9NTX5 307 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 ZBTB40Q9NUA8 1239 aa12.96□□□□□ -0.33
DDX41-216ENST00000513562 EFCAB14O75071 495 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 SLC3A2P08195 630 aaKnown RBP12.95□□□□□ -0.34
DDX41-216ENST00000513562 NOVP48745 357 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 PPARAQ07869 468 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 PDE4DQ08499 809 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 BTNL9Q6UXG8 535 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 CLEC4DQ8WXI8 215 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 MRPL38Q96DV4 380 aaKnown RBP12.95□□□□□ -0.34
DDX41-216ENST00000513562 NACAP1Q9BZK3 213 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 LRRCC1Q9C099 1032 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 LCTP09848 1927 aa12.95□□□□□ -0.34
DDX41-216ENST00000513562 MYH4Q9Y623 1939 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 ARIH2O95376 493 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 TXNP10599 105 aaKnown RBP12.94□□□□□ -0.34
DDX41-216ENST00000513562 CKBP12277 381 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 CALML3P27482 149 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 ZP2Q05996 745 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 CCDC96Q2M329 555 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 SYDE2Q5VT97 1194 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 FBXO22Q8NEZ5 403 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 DNERQ8NFT8 737 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 DCAF4Q8WV16 495 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 KAT2BQ92831 832 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 MPHOSPH6Q99547 160 aaKnown RBP12.94□□□□□ -0.34
DDX41-216ENST00000513562 C17orf80Q9BSJ5 609 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 DDX19BQ9UMR2 479 aa12.94□□□□□ -0.34
DDX41-216ENST00000513562 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.94□□□□□ -0.34
DDX41-216ENST00000513562 C19orf67A6NJJ6 358 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 TSPY2A6NKD2 308 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 H3BQ06 376 aaPredicted RBP12.93□□□□□ -0.34
DDX41-216ENST00000513562 SMARCA5O60264 1052 aaPredicted RBP12.93□□□□□ -0.34
DDX41-216ENST00000513562 NMT2O60551 498 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 MMP3P08254 477 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 SLC16A2P36021 539 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 CHMP4BP1P59074 171 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 RPS6P62753 249 aaKnown RBP12.93□□□□□ -0.34
DDX41-216ENST00000513562 MKRN4PQ13434 485 aaPredicted RBP12.93□□□□□ -0.34
DDX41-216ENST00000513562 COL19A1Q14993 1142 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 TIGD5Q53EQ6 642 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 TTBK2Q6IQ55 1244 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 TRAF7Q6Q0C0 670 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 RNF207Q6ZRF8 634 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 SP7Q8TDD2 431 aaPredicted RBP12.93□□□□□ -0.34
DDX41-216ENST00000513562 AFG1LQ8WV93 481 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 CRBNQ96SW2 442 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 NAPBQ9H115 298 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 PRKAG3Q9UGI9 489 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 GTF2IRD1Q9UHL9 959 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 CTNNA3Q9UI47 895 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 PNMA2Q9UL42 364 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 INSL6Q9Y581 213 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 MYH7P12883 1935 aa12.93□□□□□ -0.34
DDX41-216ENST00000513562 PTPRSQ13332 1948 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 MS4A1P11836 297 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 IKBKEQ14164 716 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 MBTPS1Q14703 1052 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 PTPROQ16827 1216 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 FAM117BQ6P1L5 589 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 CCDC62Q6P9F0 684 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 HFE2Q6ZVN8 426 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms