RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RBM15Q96T37 977 aaKnown RBP eCLIP5.13□□□□□ -1.59
NUP54-208ENST00000508604 PHAXQ9H814 394 aaKnown RBP5.13□□□□□ -1.59
NUP54-208ENST00000508604 PPT2Q9UMR5 302 aa5.13□□□□□ -1.59
NUP54-208ENST00000508604 SUGT1Q9Y2Z0 365 aa5.13□□□□□ -1.59
NUP54-208ENST00000508604 MATN3O15232 486 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 CBFA2T2O43439 604 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 FSHBP01225 129 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 FAM26FQ5R3K3 315 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 ETV3LQ6ZN32 361 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 RUFY4Q6ZNE9 571 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 C1QTNF3Q9BXJ4 246 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 MROH6A6NGR9 719 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 C1QTNF3-AMACRE9PGA6 284 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 FUCA1P04066 466 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 ZNF20P17024 532 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 RPL13P26373 211 aaKnown RBP5.12□□□□□ -1.59
NUP54-208ENST00000508604 SLC7A5Q01650 507 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 GRB10Q13322 594 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 COL9A2Q14055 689 aaPredicted RBP5.12□□□□□ -1.59
NUP54-208ENST00000508604 SURF1Q15526 300 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 TBC1D10BQ4KMP7 808 aaPredicted RBP5.12□□□□□ -1.59
NUP54-208ENST00000508604 TTLL6Q8N841 843 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 KYQ8NBH2 561 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 MTA3Q9BTC8 594 aa5.12□□□□□ -1.59
NUP54-208ENST00000508604 C11orf84Q9BUA3 381 aaPredicted RBP5.12□□□□□ -1.59
NUP54-208ENST00000508604 SUV39H1O43463 412 aa5.11□□□□□ -1.59
NUP54-208ENST00000508604 NTRK1P04629 796 aa5.11□□□□□ -1.59
NUP54-208ENST00000508604 CD300LDQ6UXZ3 194 aa5.11□□□□□ -1.59
NUP54-208ENST00000508604 DVL3Q92997 716 aaPredicted RBP5.11□□□□□ -1.59
NUP54-208ENST00000508604 KISS1RQ969F8 398 aaPredicted RBP5.11□□□□□ -1.59
NUP54-208ENST00000508604 MCMBPQ9BTE3 642 aa5.11□□□□□ -1.59
NUP54-208ENST00000508604 KLHL25Q9H0H3 589 aa5.11□□□□□ -1.59
NUP54-208ENST00000508604 GZF1Q9H116 711 aaPredicted RBP5.11□□□□□ -1.59
NUP54-208ENST00000508604 INVSQ9Y283 1065 aa5.11□□□□□ -1.59
NUP54-208ENST00000508604 THBS2P35442 1172 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 GDF5P43026 501 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 MCTP2Q6DN12 878 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 CRACR2BQ8N4Y2 399 aaPredicted RBP5.1□□□□□ -1.59
NUP54-208ENST00000508604 SLC16A11Q8NCK7 471 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 RCC1LQ96I51 464 aaKnown RBP5.1□□□□□ -1.59
NUP54-208ENST00000508604 SPATA32Q96LK8 384 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 FGD4Q96M96 766 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 GORASP1Q9BQQ3 440 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 NGRNQ9NPE2 291 aaKnown RBP5.1□□□□□ -1.59
NUP54-208ENST00000508604 FBLN5Q9UBX5 448 aa5.1□□□□□ -1.59
NUP54-208ENST00000508604 CGGBP1Q9UFW8 167 aaPredicted RBP5.1□□□□□ -1.59
NUP54-208ENST00000508604 C7orf72A4D263 438 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 EPHX1P07099 455 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 C8BP07358 591 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 EIF6P56537 245 aaKnown RBP5.09□□□□□ -1.59
NUP54-208ENST00000508604 PLEKHH3Q7Z736 793 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 ARHGEF39Q8N4T4 335 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 OR6P1Q8NGX9 317 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 LCORQ96JN0 433 aaPredicted RBP5.09□□□□□ -1.59
NUP54-208ENST00000508604 METTL5Q9NRN9 209 aaKnown RBP5.09□□□□□ -1.59
NUP54-208ENST00000508604 MARCH2Q9P0N8 246 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 SIT1Q9Y3P8 196 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 LTBP3Q9NS15 1303 aa5.09□□□□□ -1.59
NUP54-208ENST00000508604 PPP1R11O60927 126 aaPredicted RBP5.08□□□□□ -1.6
NUP54-208ENST00000508604 POMZP3Q6PJE2 187 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 USP51Q70EK9 711 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 SEC14L1Q92503 715 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 CDK5RAP1Q96SZ6 601 aaKnown RBP5.08□□□□□ -1.6
NUP54-208ENST00000508604 YIPF4Q9BSR8 244 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 ZNF394Q53GI3 561 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 PRAMEF18Q5VWM3 479 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 CCDC81Q6ZN84 652 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 C19orf47Q8N9M1 422 aaKnown RBP5.08□□□□□ -1.6
NUP54-208ENST00000508604 TXNDC5Q8NBS9 432 aaKnown RBP5.08□□□□□ -1.6
NUP54-208ENST00000508604 AKT3Q9Y243 479 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 PCDHGB7Q9Y5F8 929 aa5.08□□□□□ -1.6
NUP54-208ENST00000508604 CYP1A1P04798 512 aaPredicted RBP5.07□□□□□ -1.6
NUP54-208ENST00000508604 NAT2P11245 290 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 C6P13671 934 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 HMGA2P52926 109 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 PPP2R5EQ16537 467 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 SH3RF3Q8TEJ3 882 aaPredicted RBP5.07□□□□□ -1.6
NUP54-208ENST00000508604 SORCS2Q96PQ0 1159 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 MMP19Q99542 508 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 BTG4Q9NY30 223 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 CLEC1BQ9P126 229 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 PCDHB10Q9UN67 800 aa5.07□□□□□ -1.6
NUP54-208ENST00000508604 C9orf118A6NHY6 69 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 NOP56O00567 594 aaKnown RBP5.06□□□□□ -1.6
NUP54-208ENST00000508604 DDX3XO00571 662 aaKnown RBP eCLIP5.06□□□□□ -1.6
NUP54-208ENST00000508604 LAMTOR5O43504 91 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 CYP7B1O75881 506 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 MILR1Q7Z6M3 343 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 MIB1Q86YT6 1006 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 PLEKHO2Q8TD55 490 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 KRTAP3-1Q9BYR8 98 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 ST6GALNAC2Q9UJ37 374 aa5.06□□□□□ -1.6
NUP54-208ENST00000508604 A0A1W2PQH9 124 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 ANKRD34BA5PLL1 514 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 NPEPPSL1A6NEC2 478 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 C22orf46C9J442 243 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 KCNH1O95259 989 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 PLS3P13797 630 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 TACR2P21452 398 aa5.05□□□□□ -1.6
NUP54-208ENST00000508604 NKX3-2P78367 333 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms