RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PARP1P09874 1014 aaKnown RBP13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 TXNP10599 105 aaKnown RBP13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 CYP2C9P11712 490 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 MRPL12P52815 198 aaKnown RBP13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 QRICH1Q2TAL8 776 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 BRDTQ58F21 947 aaPredicted RBP13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 RGS22Q8NE09 1264 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 PPP1R13LQ8WUF5 828 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 TBC1D5Q92609 795 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 SCLYQ96I15 445 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 UBAC1Q9BSL1 405 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 KRT23Q9C075 422 aa13.49□□□□□ -0.25
HMGCS1-204ENST00000507293 SUPT20HL2P0C7V6 817 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 PDE4AP27815 886 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 TTLL4Q14679 1199 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 RAB30Q15771 203 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 NBPF20Q3BBV1 942 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 FAM47CQ5HY64 1035 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 OTOP2Q7RTS6 562 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 SYTL5Q8TDW5 730 aaPredicted RBP13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 TAAR1Q96RJ0 339 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 CNNM2Q9H8M5 875 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 VAT1LQ9HCJ6 419 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 COL20A1Q9P218 1284 aa13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 TRIP12Q14669 1992 aaPredicted RBP13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 LAMA2P24043 3122 aaKnown RBP13.48□□□□□ -0.25
HMGCS1-204ENST00000507293 A6NJR5 290 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 KPNA6O60684 536 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 GSPT1P15170 499 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 IFIT1BQ5T764 474 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 TTC22Q5TAA0 569 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 FBXO11Q86XK2 927 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 MCF2L2Q86YR7 1114 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 RPUSD2Q8IZ73 545 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 USP38Q8NB14 1042 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 NKX2-4Q9H2Z4 354 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 PRDM12Q9H4Q4 367 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 JMJD4Q9H9V9 463 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 MSRAQ9UJ68 235 aa13.47□□□□□ -0.25
HMGCS1-204ENST00000507293 SEC23AQ15436 765 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 NFRKBQ6P4R8 1299 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 CCDC62Q6P9F0 684 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 SEPT14Q6ZU15 432 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 CYB5R4Q7L1T6 521 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 STAG2Q8N3U4 1231 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 NSUN6Q8TEA1 469 aaKnown RBP13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 VWCEQ96DN2 955 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 RMDN3Q96TC7 470 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 GAS2L1Q99501 681 aaPredicted RBP13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 MAF1Q9H063 256 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 YBX2Q9Y2T7 364 aaKnown RBP13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 MRPL11Q9Y3B7 192 aaKnown RBP13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 MYO9BQ13459 2157 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 PTPRSQ13332 1948 aa13.46□□□□□ -0.25
HMGCS1-204ENST00000507293 CUL9Q8IWT3 2517 aa13.46□□□□□ -0.26
HMGCS1-204ENST00000507293 ZBBXA8MT70 800 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 GH1P01241 217 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 PFKMP08237 780 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 MMP3P08254 477 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 EIF2AK2P19525 551 aaKnown RBP13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 RABGGTBP53611 331 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 CHMP4BP1P59074 171 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 STXBP2Q15833 593 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 LY6KQ17RY6 165 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 DEFB128Q7Z7B8 93 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 AFG1LQ8WV93 481 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 IWS1Q96ST2 819 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 SUPT16HQ9Y5B9 1047 aaKnown RBP13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 SLC4A7Q9Y6M7 1214 aa13.45□□□□□ -0.26
HMGCS1-204ENST00000507293 BAZ2BQ9UIF8 2168 aaKnown RBP13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 KLRF2D3W0D1 207 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 OPLAHO14841 1288 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 PPP1R11O60927 126 aaPredicted RBP13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 CFBP00751 764 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 PTPN11Q06124 597 aaPredicted RBP13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 ARHGAP1Q07960 439 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 ARHGEF16Q5VV41 709 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 CHST3Q7LGC8 479 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 TET1Q8NFU7 2136 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 AMNQ9BXJ7 453 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 SLC28A3Q9HAS3 691 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 PXMP2Q9NR77 195 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 NOD1Q9Y239 953 aa13.44□□□□□ -0.26
HMGCS1-204ENST00000507293 CYP21A2P08686 494 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 MYOGP15173 224 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 HSD17B4P51659 736 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 PTH1RQ03431 593 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 TRDNQ13061 729 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 RETREG2Q8NC44 543 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 RUFY2Q8WXA3 655 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 PPM1EQ8WY54 764 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 MTMR8Q96EF0 704 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 DOCK5Q9H7D0 1870 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 MAD2L2Q9UI95 211 aa13.43□□□□□ -0.26
HMGCS1-204ENST00000507293 CDH23Q9H251 3354 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 PALM3A6NDB9 673 aaPredicted RBP13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 PITPNM1O00562 1244 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 ZBTB5O15062 677 aa13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 EIF3JO75822 258 aaKnown RBP13.42□□□□□ -0.26
HMGCS1-204ENST00000507293 NR3C2P08235 984 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms