RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 PIK3CDO00329 1044 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 MEIS2O14770 477 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 OPLAHO14841 1288 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 FOSP01100 380 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 MYCLP12524 364 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 XRCC5P13010 732 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 EIF2AK2P19525 551 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 GRK4P32298 578 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 KRT2P35908 639 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 ALDH5A1P51649 535 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 UBXN2AP68543 259 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 PDE4DQ08499 809 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 IRF5Q13568 498 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 CCL14Q16627 93 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 ZNF792Q3KQV3 632 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 MFSD14CQ5VZR4 134 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 MCTP2Q6DN12 878 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 MCTP1Q6DN14 999 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 FAM177A1Q8N128 213 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 REXO1Q8N1G1 1221 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 SLAIN1Q8ND83 568 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 MAML3Q96JK9 1138 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 PGBD1Q96JS3 809 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 PHF20Q9BVI0 1012 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 GJB4Q9NTQ9 266 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 TMEM260Q9NX78 707 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 CNPY2Q9Y2B0 182 aa9.4□□□□□ -0.9
LIMCH1-206ENST00000505705 CASP8AP2Q9UKL3 1982 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 CEP350Q5VT06 3117 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 MGAMO43451 1857 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 DNAJC25-GNG10A0A024R161 153 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 CCDC194A0A1B0GVG4 234 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 VPS37CA5D8V6 355 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 SOWAHBA6NEL2 793 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 MMP1P03956 469 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 HOXC6P09630 235 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 ELNP15502 786 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 PDCP20941 246 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 ZNF76P36508 570 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 AP3B2Q13367 1082 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 STXBP2Q15833 593 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 SLC9C1Q4G0N8 1177 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 FBXO46Q6PJ61 603 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 EEPD1Q7L9B9 569 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 FAM133AQ8N9E0 248 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 RASGRP4Q8TDF6 673 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 PXYLP1Q8TE99 480 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 TRIB2Q92519 343 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 USP6NLQ92738 828 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 IWS1Q96ST2 819 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 TINF2Q9BSI4 451 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 ANO3Q9BYT9 981 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 PXMP2Q9NR77 195 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 RBM19Q9Y4C8 960 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 PLXNB2O15031 1838 aa9.39□□□□□ -0.91
LIMCH1-206ENST00000505705 ZSWIM8A7E2V4 1837 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 BTBD18B2RXH4 712 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 MYCP01106 439 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 HMGCRP04035 888 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 NR3C2P08235 984 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 CNGA1P29973 690 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 CCND2P30279 289 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 CYP2C19P33261 490 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 GHRHRQ02643 423 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 PGM5Q15124 567 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 NONOQ15233 471 aaKnown RBP eCLIP9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 OLFML2BQ68BL8 750 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 PIK3AP1Q6ZUJ8 805 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 ARMCX2Q7L311 632 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 KRT25Q7Z3Z0 450 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 ZNF467Q7Z7K2 595 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 TEX2Q8IWB9 1127 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 DIS3L2Q8IYB7 885 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 MSL3Q8N5Y2 521 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 DAGLBQ8NCG7 672 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 FBXO18Q8NFZ0 1043 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 SH3TC2Q8TF17 1288 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 TSHZ2Q9NRE2 1034 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 RTEL1Q9NZ71 1219 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 FLRT1Q9NZU1 646 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 COL20A1Q9P218 1284 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 ZHX1Q9UKY1 873 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 PCNTO95613 3336 aa9.38□□□□□ -0.91
LIMCH1-206ENST00000505705 SYNGAP1Q96PV0 1343 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 LOC102724159A0A0B4J2E5 919 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 INHAP05111 366 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 CLK2P49760 499 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 PWP2Q15269 919 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 PRAMEF19Q5SWL8 479 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 MAMDC4Q6UXC1 1216 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 SEPT14Q6ZU15 432 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 OXER1Q8TDS5 423 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 TBCKQ8TEA7 893 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 SHISA4Q96DD7 197 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 ZFP91Q96JP5 570 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 PDCD2LQ9BRP1 358 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 MCOLN1Q9GZU1 580 aa9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 DDX49Q9Y6V7 483 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-206ENST00000505705 SMCHD1A6NHR9 2005 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms