RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 B4GALT4O60513 344 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 CCL23P55773 120 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 RPS6P62753 249 aaKnown RBP13.54□□□□□ -0.24
COL6A3-213ENST00000493475 PTPN11Q06124 597 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-213ENST00000493475 BFSP2Q13515 415 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 ASPRV1Q53RT3 343 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 TJAP1Q5JTD0 557 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 RASIP1Q5U651 963 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 TTBK2Q6IQ55 1244 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 UBAC1Q9BSL1 405 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 KRT23Q9C075 422 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 ASTN1O14525 1302 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 TNKSO95271 1327 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 ABCB11O95342 1321 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 RBM47A0AV96 593 aaKnown RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 TXNP10599 105 aaKnown RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 SDSP20132 328 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 PSMC6P62333 389 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 IRX5P78411 483 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 PURAQ00577 322 aaKnown RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 USH1GQ495M9 461 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 NFRKBQ6P4R8 1299 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 OTOP2Q7RTS6 562 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 CHD1LQ86WJ1 897 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 PNMA1Q8ND90 353 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 NSUN6Q8TEA1 469 aaKnown RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 NOC4LQ9BVI4 516 aaKnown RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 TRPV6Q9H1D0 765 aa13.53□□□□□ -0.24
COL6A3-213ENST00000493475 MRPL11Q9Y3B7 192 aaKnown RBP13.53□□□□□ -0.24
COL6A3-213ENST00000493475 KIF28PB7ZC32 967 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 PARP1P09874 1014 aaKnown RBP13.52□□□□□ -0.25
COL6A3-213ENST00000493475 SNHG28P0DPA3 235 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 IGFBP4P22692 258 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 TRDNQ13061 729 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 PPP2R2DQ66LE6 453 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 CWC27Q6UX04 472 aaKnown RBP13.52□□□□□ -0.25
COL6A3-213ENST00000493475 SLC30A10Q6XR72 485 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 C16orf59Q7L2K0 433 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 ZNF589Q86UQ0 364 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-213ENST00000493475 ATXN2LQ8WWM7 1075 aaKnown RBP13.52□□□□□ -0.25
COL6A3-213ENST00000493475 IWS1Q96ST2 819 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 PCDHA11Q9Y5I1 949 aa13.52□□□□□ -0.25
COL6A3-213ENST00000493475 MCM3APO60318 1980 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 KDM4AO75164 1064 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 PARNO95453 639 aaKnown RBP13.51□□□□□ -0.25
COL6A3-213ENST00000493475 ATP2A2P16615 1042 aaKnown RBP13.51□□□□□ -0.25
COL6A3-213ENST00000493475 EDNRBP24530 442 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 STXBP2Q15833 593 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 CDC37Q16543 378 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-213ENST00000493475 RASGRP2Q7LDG7 609 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 SMC5Q8IY18 1101 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 CLEC4DQ8WXI8 215 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 ZSCAN10Q96SZ4 725 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-213ENST00000493475 DSCC1Q9BVC3 393 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 KATNAL1Q9BW62 490 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 FTOQ9C0B1 505 aaKnown RBP eCLIP13.51□□□□□ -0.25
COL6A3-213ENST00000493475 OSBPL3Q9H4L5 887 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 PRDM12Q9H4Q4 367 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 THEGQ9P2T0 379 aa13.51□□□□□ -0.25
COL6A3-213ENST00000493475 ERICH2A1L162 156 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 A6NJR5 290 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 GTPBP6O43824 516 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-213ENST00000493475 GH1P01241 217 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 CASTP20810 708 aaKnown RBP13.5□□□□□ -0.25
COL6A3-213ENST00000493475 CHMP4BP1P59074 171 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 AAK1Q2M2I8 961 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 NBPF20Q3BBV1 942 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 TMEM67Q5HYA8 995 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 IFIT1BQ5T764 474 aaKnown RBP13.5□□□□□ -0.25
COL6A3-213ENST00000493475 ARHGEF16Q5VV41 709 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 FBXO11Q86XK2 927 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 TBC1D10CQ8IV04 446 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 CAGE1Q8TC20 777 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 PHOSPHO2Q8TCD6 241 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 PPM1EQ8WY54 764 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 PURBQ96QR8 312 aaKnown RBP13.5□□□□□ -0.25
COL6A3-213ENST00000493475 SLC9A7Q96T83 725 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 ZKSCAN3Q9BRR0 538 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 TRMT13Q9NUP7 481 aaKnown RBP13.5□□□□□ -0.25
COL6A3-213ENST00000493475 MAP3K20Q9NYL2 800 aaKnown RBP13.5□□□□□ -0.25
COL6A3-213ENST00000493475 CDH23Q9H251 3354 aa13.5□□□□□ -0.25
COL6A3-213ENST00000493475 GRIN2DO15399 1336 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 NEDD4P46934 1319 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 GRXCR1A8MXD5 290 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 GOLGA8HP0CJ92 632 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 PBX2P40425 430 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 KCNJ6P48051 423 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 NUCB1Q02818 461 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 SART3Q15020 963 aaKnown RBP13.49□□□□□ -0.25
COL6A3-213ENST00000493475 DGKDQ16760 1214 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 KCNV1Q6PIU1 500 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 SAMD3Q8N6K7 520 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 RUFY2Q8WXA3 655 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 ANKS1AQ92625 1134 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 RMDN3Q96TC7 470 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 WNT8AQ9H1J5 351 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 NKX2-4Q9H2Z4 354 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 LRRC37A2A6NM11 1700 aa13.49□□□□□ -0.25
COL6A3-213ENST00000493475 UMODL1Q5DID0 1318 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms